Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3051 ATGGATACCACACTCTCCGTTCTCAAGGATTACTTTGGGTTTTTGAGCTTTCGGCCATATCAGAGAGAGGTTATTGAGAAAATTATTGAGAAAAGGGACTGCATGGTAGTCATGGCTACTGGTAGTGGAAAGTCCTTATGTTATCAGGTGCCTCCATTGGTTGTGAAAAAGACCGGGATAGTTGTGAGCCCTCTAATATCATTGATGCAAGATCAGGTAATGGCTTTGAAACAGCGAGGTATCAAAGCTGAATATCTTTCAAGCGCTCAAAAGGATTACACTGTTCAGAGTAAAGCTGAGCGTGGTCAATTTGACCTTCTCTTCATGACTCCTGAGAAGGCATGCACAATTCCCACCAGTTTCTGGTCCAACTTGCTAAAGGAAGGAATCAGTCTTTTTGCTGTTGATGAAGCACATTGTATATCGGAATGGGGGCATGACTTTAGGGTGGAATACAAGCAGTTAGACAAGTTACGCGGAGTTCTGTTAGATGTTCCTTATGTTGGTCTTACTGCAACTGCTACTGAAAAGGTTCGGTTTGACATCACTAATTCCCTGAAGATGAATAATCCTTACGTTGTAGTTGGTTCATTTGATCGCCCAAATCTTTTCTACGGTGTCAAGCAATTTAACCGTGGACAATCTTTTATTGATGAGCTTGTGGAGGAAATTTCAAAAGAAGTTGCTAATGGTTGTTCAACTATAATTTACTGCACAACAATCAAAGATGTAGAACAGATTTACAAGTCACTTACGGAAGCAGGTATTAATGCTGGAATGTACCACGGCCAAATGGATGGAAAATCACGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAAGTGCAAATCATGGTGGCCACAATTGCCTTTGGCATGGGCATTGATAAACCTAATATAAGAAAAGTGATTCACTATGGCTGCCCCAAGAATCTAGAGTCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGCGATTTTTATGCTGCAGAATTAAAATCGGAAAACCAAAAAAAAGCTGTTATGGAGTCACTGATGGCTGCTCAACACTATTGTTTGTCGGCAACCTGCAGAAGAAAGTTCTTGCTTGAACACTTCGGGGAAAAATTTGCAGCTGATAGATGTGGAAACTGTGATAACTGCACAGTCTCAAAGCAGCAGCGTGACATGTCAAGAGAAGCCTTTCTTCTAATGGCTTGCATTCATTCATGCAAGGGCAATTGGGGCCTTAATATGCCGATCGACGTCCTACGTGGCTCTCGAGCAAAGAAGATAATCGAAGCTCAATATGACAAGCTTCCACTTCATGGACTTGGGAAAACATACCAAGCAAATTGGTGGAAAGCACTCGGACATCAATTGCTTTCCCTAGGTTATTTGAAGGAGACTGTCCGTGACATGTACAGATTTGTAAGTGTCAGTTCAAAAGGAGAGAAATTTTTGGCCTCTTCTAGACCAGACTATCAACCTCCTTTGGTTTTGCCATTGGTTGGTGAGCTTGAAGAGGAGGAAAATAGAAGCACAGAAGAATTCAAAGTTTTGGCCGCGTCAGAATCAGAAGGTTTCTCGGAGGCTGAGGGACAGCTCTACCAAATGCTTTTAGAAGAAAGATTAAAGCTTGCAAGAAGTGTCGGAACAGCTCCATATGCTCTATGTGGTGATCAAACAATCAAAAAAATTGCTTTGACAAGACCATCTTCAAAAGCAAGGCTAGCACTCATTGATGGTGTTAATCAGCACCTTGTAACAAAATATGGAGACTATTTTCTTCAAGCTATTCAGAAACTATCACGAGAATTAAACCTATCAATGGATGGTCAGCCAAGTTTCCAAACTAGTGAAGTAAGGAAAGTATCGCCGATAGTAACCAACAAATCAACAAAGTTGTCAGGAGCAAAGTTTGAAGCATGGAAAATGTGGCATGAAGAAGGTCTTTCTCTTCAGAAGATTGCTAACTTTCCTGGTAGATCAGCTCCTATACAAGAACAAACTGTTGCTCAGTATCTGCTGGATGCTGCCCAAGAAGGATTACCGTTTGATTGGCCTAGATTCTGTGAGACGATAGGACTGAAACAAGATCACATATCAGCAATTCAGGCTGCTATTGTAAAAGTTGGATCTGCGGATAAGATGAAGCCTATAAAAAATGAATTGCCAGAAGAAATAACGTATCCACACATCAAGGCTTACTTGACAATGCGAACCTGTGGAATATCCTTAGAAAGCATTCAATCTGAAGGTCGCCAGTCTGTGAAAGATGGTGAAGCTGTAAACAATGCATCAAATTCATCAGAGCCTCCTTTAGAAACATGCAACACAGAAAGTCATATTGAGGCCGACATTTCTACCAAAAGCACGATGGAAATGGAAATTGATGTAGTACCTGCTGGACCTGTCAATGGTTGCCAGGTACAGAAGCTTCCATTATCGTGTGAGGAAGAATTCACAAGCAAACGTCTGAAAGTCAGCGAAACAGAGGAAGTGAATTTAATTAAGTTGAAAGCTACAGAGAGTTCTGTTGTAGAGTGGCTGAAGAACCTTGATGAAGGGGCTACTTTGACTGATATGCTGGAGCACTTCAATGGATCCAATGAAGATTCAGTTGTTGAACTGCTAAATTCCCTTGAGTGTGACTTTTTGATATATAAGAAAGGTAATATGTACAGGGCTATGTAA 2730 0.411 MDTTLSVLKDYFGFLSFRPYQREVIEKIIEKRDCMVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGIKAEYLSSAQKDYTVQSKAERGQFDLLFMTPEKACTIPTSFWSNLLKEGISLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLLDVPYVGLTATATEKVRFDITNSLKMNNPYVVVGSFDRPNLFYGVKQFNRGQSFIDELVEEISKEVANGCSTIIYCTTIKDVEQIYKSLTEAGINAGMYHGQMDGKSREESHRLFVRDEVQIMVATIAFGMGIDKPNIRKVIHYGCPKNLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYAAELKSENQKKAVMESLMAAQHYCLSATCRRKFLLEHFGEKFAADRCGNCDNCTVSKQQRDMSREAFLLMACIHSCKGNWGLNMPIDVLRGSRAKKIIEAQYDKLPLHGLGKTYQANWWKALGHQLLSLGYLKETVRDMYRFVSVSSKGEKFLASSRPDYQPPLVLPLVGELEEEENRSTEEFKVLAASESEGFSEAEGQLYQMLLEERLKLARSVGTAPYALCGDQTIKKIALTRPSSKARLALIDGVNQHLVTKYGDYFLQAIQKLSRELNLSMDGQPSFQTSEVRKVSPIVTNKSTKLSGAKFEAWKMWHEEGLSLQKIANFPGRSAPIQEQTVAQYLLDAAQEGLPFDWPRFCETIGLKQDHISAIQAAIVKVGSADKMKPIKNELPEEITYPHIKAYLTMRTCGISLESIQSEGRQSVKDGEAVNNASNSSEPPLETCNTESHIEADISTKSTMEMEIDVVPAGPVNGCQVQKLPLSCEEEFTSKRLKVSETEEVNLIKLKATESSVVEWLKNLDEGATLTDMLEHFNGSNEDSVVELLNSLECDFLIYKKGNMYRAM* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3051 909 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 6 458 IPR004589 GO:0004386|GO:0006310
Mal2g3051 909 SMART ultradead3 13 210 IPR014001 -
Mal2g3051 909 ProSiteProfiles HRDC domain profile. 541 621 IPR002121 GO:0003676
Mal2g3051 909 Pfam Helicase conserved C-terminal domain 218 325 IPR001650 -
Mal2g3051 909 Gene3D - 200 401 IPR027417 -
Mal2g3051 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 340 IPR027417 -
Mal2g3051 909 Pfam Helix-turn-helix domain 653 749 IPR029491 -
Mal2g3051 909 Pfam HRDC domain 546 611 IPR002121 GO:0003676
Mal2g3051 909 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 7 740 - -
Mal2g3051 909 Gene3D - 2 198 IPR027417 -
Mal2g3051 909 SUPERFAMILY "Winged helix" DNA-binding domain 398 504 IPR036390 -
Mal2g3051 909 Pfam RQC domain 403 501 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mal2g3051 909 SMART hrdc7 541 621 IPR002121 GO:0003676
Mal2g3051 909 SUPERFAMILY HRDC-like 540 621 IPR010997 GO:0000166|GO:0044237
Mal2g3051 909 MobiDBLite consensus disorder prediction 765 789 - -
Mal2g3051 909 Gene3D HRDC domain 539 624 IPR044876 -
Mal2g3051 909 Gene3D - 402 526 IPR036388 -
Mal2g3051 909 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 372 IPR001650 -
Mal2g3051 909 CDD DEXHc_RecQ 5 199 - -
Mal2g3051 909 SMART helicmild6 245 326 IPR001650 -
Mal2g3051 909 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Mal2g3051 909 PANTHER DNA HELICASE RECQ FAMILY MEMBER 7 740 - -
Mal2g3051 909 CDD SF2_C_RecQ 200 335 - -
Mal2g3051 909 Pfam RecQ zinc-binding 349 400 IPR032284 -
Mal2g3051 909 SMART RQC_2 407 511 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mal2g3051 909 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3051 Mal-Chr2 42664587 42674257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3051 12 342 Eukaryotic Initiation Factors Gene Family AT3G19760 22.126 1.23e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3051 K03654 - gmx:100797777 1432.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g3051 2 42664587 42674257 Mal2g3051 2 42664587 42674257 ECH