Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3012 ATGACCGTACAATCAACCTTAAAGCTTCAAAACCCGAAGCAAAACCCTTCAAGCTCAAATTTTGAATCTAACCCATCATGCAAAACCACCACAAAAACCCATAACCGCCACAAAAAGCTTCTCAAAATCATTCTCACCGACCATGATGCAACCGATTCAGAATCCTCCGGCGACGATGAAACCCCACAAAACCCTCGAAGAGTGAAGAGAGAAATCACTCACATCACCATGCACTTTCCTTCTCTTTCTAACTCTCCAAAAACTTCACCTTCTTCTTCATCTTGCTCTACCAACCCGACCCGTTTCAAAAAACCCAGAAAATCACCAACAAACTCCGGTGGTTCTAGCCGCCGGAGCATGTTCCGTGGTGTTCGCAAGAGAACTTCGGGTAGGTGGATAGCGGAGATCCGTGACCCGGCTCAAAGAAAACGCCTCTGGCTCGGAACTTTTGACACAGAGGAGGAAGCCGCCGCTGTTTATGACGACGCCGCCGTGAAGATCTATGGTCCAAACACCGCTGTTAACTTTCCAAACGTTTCCGCCGTTAAGAAAAGCGTTAACGTGTCGCCGGAGATTGGTTTCGCTTCTCCGACGTCCGTTTTACCTTTCTGCGACGGCGAAACGCCGTTTGACGGTTTACGTTACGGCGCGGTGGATGCGTTTGGGTTTGATATCGACGCGCCGTTAAGTTTAACGGACGTTACCTTTGTGCCGTTTGAGAAAGAAAAAGAAGAGTTTGGTGAGTTTGACTTGGACGAGTACTTGACTTGGCCAAGTTAA 780 0.4821 MTVQSTLKLQNPKQNPSSSNFESNPSCKTTTKTHNRHKKLLKIILTDHDATDSESSGDDETPQNPRRVKREITHITMHFPSLSNSPKTSPSSSSCSTNPTRFKKPRKSPTNSGGSSRRSMFRGVRKRTSGRWIAEIRDPAQRKRLWLGTFDTEEEAAAVYDDAAVKIYGPNTAVNFPNVSAVKKSVNVSPEIGFASPTSVLPFCDGETPFDGLRYGAVDAFGFDIDAPLSLTDVTFVPFEKEKEEFGEFDLDEYLTWPS* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3012 259 PIRSF PTI6 6 259 IPR017392 GO:0003700
Mal2g3012 259 MobiDBLite consensus disorder prediction 1 30 - -
Mal2g3012 259 MobiDBLite consensus disorder prediction 77 118 - -
Mal2g3012 259 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Mal2g3012 259 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Mal2g3012 259 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 34 255 - -
Mal2g3012 259 SUPERFAMILY DNA-binding domain 119 177 IPR016177 GO:0003677
Mal2g3012 259 Pfam AP2 domain 121 169 IPR001471 GO:0003700|GO:0006355
Mal2g3012 259 MobiDBLite consensus disorder prediction 1 124 - -
Mal2g3012 259 CDD AP2 119 179 IPR001471 GO:0003700|GO:0006355
Mal2g3012 259 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Mal2g3012 259 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 34 255 - -
Mal2g3012 259 ProSiteProfiles AP2/ERF domain profile. 120 177 IPR001471 GO:0003700|GO:0006355
Mal2g3012 259 MobiDBLite consensus disorder prediction 59 74 - -
Mal2g3012 259 SMART rav1_2 120 183 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3012 Mal-Chr2 41864323 41865102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3012 39 213 AP2-EREBP Transcription Factor Family AT4G27950 40.099 7.16e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal2g3012 AP2 3.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3012 K13434 - gmx:102660028 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g3012 2 41864323 41865102 Mal2g3012 2 41864323 41865102 ECH
Mal2g3012 2 41864323 41865102 Mal8g1550 8 30231620 30232522 PCT