Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g3000 ATGTCGTATGTTCCTCCACACTTGAGAAACGCGGCGAGTTCAACCACCGTGTCCACCACCACCACCGGAACCCTAGACAACCACCACCACCACCACCATCACAACAACAACAACCTCGCATTCTCAAACTCACACTCCAACACTCCTTCTCTCTTCAATGCCTCTCGTCGTACCTCCGCCGCTCCTCCGTCGAGGATTATCGCCGCCGTTCCTGACACTGTCTTCCCTAATTGGCAACCTTCTGAACGCGTTTCCCGTATGAACCCTGACCAGATTGAAGAGGTCCGCCATCGGCTTAATCTTGATGTTACGGTTTCATCTGACTCTCCTGCTGCACCTGCACCTATAGAATCGTTCAATGATATGTGTTTGCATCCAAGTATCATGAAGGACATTGCTTATCATGATTACACCAGGCCAACTTCTATCCAGGCACAGGCCATGCCTATTGCTCTCAGTGGAAGGGATCTTTTGGGTTGTGCTGAAACTGGTAGCGGGAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTGGCCCAACCTCCAATTCGGCGCGGAGATGGTCCCTTAGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAAAAAGAGGTCCAAGCTTTTAGCAGATCTCTCGAATCATTTAAAACTGCCATAGTTGTCGGTGGAACTAACATTGAAAAGCAGAGGTCTGAACTAAGAGTGGGAGTTGAAATAGCAGTTGCCACCCCTGGAAGATTCATTGACCACTTACAACAAGGCAACACTTCCCTCTCTAGAATTTCTTATGTTGTTCTAGATGAGGCCGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGAGAGATAATGAGAAGTCTTCCAGAGAAACATCAAACACTACTGTTTAGTGCAACTATGCCTGTGGAGATCGAAGCGTTATCAAAGGAGTACTTAACTAGCCCCGTGCAAGTTAAGGTGGGAAAAGTGAGCAGCCCAACCACTAATGTTTCACAAACTCTTGTAAAGGTTTCTGAAAGTGATAAGATTGATCGCCTTCTAGATTTGCTTGTAGAGGAGGCATCACACGCTGAAAAGTGTGGTCATCCATTTCCGTTGACAATCGTGTTTGTTGAGAGAAAGACAAGGTGCGATGAAGTTGCTGAAGCATTAATAGCTCAAGGATTATCTGCAGTTTCTCTGCATGGTGGCCGCAGTCAGAGTGAAAGAGAGGCTGCCTTGCATGATTTTCGGAGTAGCTCAACGAGCATTTTGGTTGCCACCGATGTTGCATCTCGGGGTTTGGATGTCACAGGAGTGTCACATGTCATCAATCTTGATCTTCCAAAGACCACAGAAGATTATATACACCGGATTGGAAGGACAGGGCGTGCAGGATCAACTGGCATAGCCACTTCCTTTTACACTGATCGTGATATGTTCCTTGTGACAAATATAAGGAAAGCCATAGCTGATGCTCAATCTGGGAACGCTGTGGCATTTGCTACTGGGAAGGTTGCCAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACATAAAGAGGCAAATATTGCGTTATCTAAACACCTTGGACCAGGAGCTGCTTCAATTAACATAGAAGATAAGTATAGATTCATGATTACTGCCTCAAACAGTAAAGGAGAGGGCACGGCTGATAGTGCATGGGACGATTGA 1689 0.4606 MSYVPPHLRNAASSTTVSTTTTGTLDNHHHHHHHNNNNLAFSNSHSNTPSLFNASRRTSAAPPSRIIAAVPDTVFPNWQPSERVSRMNPDQIEEVRHRLNLDVTVSSDSPAAPAPIESFNDMCLHPSIMKDIAYHDYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVQAFSRSLESFKTAIVVGGTNIEKQRSELRVGVEIAVATPGRFIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQIREIMRSLPEKHQTLLFSATMPVEIEALSKEYLTSPVQVKVGKVSSPTTNVSQTLVKVSESDKIDRLLDLLVEEASHAEKCGHPFPLTIVFVERKTRCDEVAEALIAQGLSAVSLHGGRSQSEREAALHDFRSSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGRAGSTGIATSFYTDRDMFLVTNIRKAIADAQSGNAVAFATGKVARRKEKEAAAAHKEANIALSKHLGPGAASINIEDKYRFMITASNSKGEGTADSAWDD* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g3000 562 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 506 IPR001650 -
Mal2g3000 562 CDD SF2_C_DEAD 336 474 - -
Mal2g3000 562 Pfam Helicase conserved C-terminal domain 348 465 IPR001650 -
Mal2g3000 562 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 117 145 IPR014014 GO:0003724
Mal2g3000 562 SMART ultradead3 136 339 IPR014001 -
Mal2g3000 562 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 485 IPR027417 -
Mal2g3000 562 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 19 527 - -
Mal2g3000 562 Pfam DEAD/DEAH box helicase 141 311 IPR011545 GO:0003676|GO:0005524
Mal2g3000 562 CDD DEADc 128 325 - -
Mal2g3000 562 Gene3D - 77 328 IPR027417 -
Mal2g3000 562 MobiDBLite consensus disorder prediction 1 58 - -
Mal2g3000 562 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 148 324 IPR014001 -
Mal2g3000 562 MobiDBLite consensus disorder prediction 37 58 - -
Mal2g3000 562 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 270 278 IPR000629 -
Mal2g3000 562 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 19 527 - -
Mal2g3000 562 MobiDBLite consensus disorder prediction 7 24 - -
Mal2g3000 562 Gene3D - 330 523 IPR027417 -
Mal2g3000 562 SMART helicmild6 384 465 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g3000 Mal-Chr2 41577163 41584794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g3000 117 487 Eukaryotic Initiation Factors Gene Family AT1G72730 35.200 8.57e-69 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g3000 K12823 - gmx:100818387 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g3000 2 41577163 41584794 Mal2g3000 2 41577163 41584794 ECH