Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2976 ATGACTAGAAAAAAGGTGAAGCTTGCCTTCATTGTCAATGATGCTGCTAGGAAAGCAACATATAAGAAAAGGAAGAAGGGTCTATTGAAGAAGGTAGATGAACTGAGCACTCTTTGTGGAATTGAAGCTTGTGCTATAGTTTATGGCCCTTATGAACCTCAACCTGAGATTTGGCCATCACCATGGGGAGTTCAAAGGGTGCTCTCAAAATTTAGGGCAAAGCCTGAATTTGAACAAACAAAAAAAATGGCGAATCAAGAGACTTTCATGAAATTGAGAGTTTCAAAGGCTAAAGATAAACTGACGAAATTAAGAAAAGACAATAGGGAGAAAGAGACGATGATGCTCATTGATCAATGTATTAATGAAGGTAAAATTGTGCGCAATGATATGTCACTAGTTGATTTGAATTATCTTGCTTGGTTGATTGACCATAATTTGAAGAACATTGGTAGAAGGTTAGAAGCATGGGATGATAACAATGATGTTCAAATTCAAAGTCATAACATGACTATTGAGAGCCAAGTCCAACTACAATTGGCACCACCACCATCACCACCATTAATATCCAAGAATGAAGAAATGGCAATGATGAGTCATGGCCATGTTGGGATACCTATAAATAATGTTGACATTATGGAAAGGCAATTCTTTATGGATATGACAATGAATGGTAATGGGGATGAGATAATACCATTTGGTGAGTTCAATCCTGAATTTTTGCCCAACCTATTACCTTGA 741 0.3698 MTRKKVKLAFIVNDAARKATYKKRKKGLLKKVDELSTLCGIEACAIVYGPYEPQPEIWPSPWGVQRVLSKFRAKPEFEQTKKMANQETFMKLRVSKAKDKLTKLRKDNREKETMMLIDQCINEGKIVRNDMSLVDLNYLAWLIDHNLKNIGRRLEAWDDNNDVQIQSHNMTIESQVQLQLAPPPSPPLISKNEEMAMMSHGHVGIPINNVDIMERQFFMDMTMNGNGDEIIPFGEFNPEFLPNLLP* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2976 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mal2g2976 246 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mal2g2976 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 197 - -
Mal2g2976 246 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 197 - -
Mal2g2976 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal2g2976 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal2g2976 246 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Mal2g2976 246 Coils Coil 94 114 - -
Mal2g2976 246 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Mal2g2976 246 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal2g2976 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2976 Mal-Chr2 40959549 40960289 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2976 1 155 Type I MADS-box Gene Family AT5G48670 56.774 4.30e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g2976 SRF-TF 2.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2976 - - mtr:MTR_4g032620 271.552