Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2975 ATGGCTAATCGAAATACGAAACTTGACTACATAACTGATGACTCGAAGAGGAAGGCAACATTCAGAAAAAGGAAACAGGGTATAATTAAGAAGATCAATGAAATCACTATCCTTTGTGGAATTGATGCATGTGGTATCATCTATGATGAAAACAATGAGCAATCAGCTGTTTGTCCATCAAAAGAAGGAGTCCTAATGGTGCTGGATAGATTCAGGAACTTTCCTGAATTGGAACAAAGAAAAGTTACGGTGGATCATGAAGGCTTCTTGAGGCAATCCATAGAACAATCTCAAGAGAAGTTGAATAAACAAAAGGAAAACTCCAGGAAGAAGGAAATGAATGAGATAATCTGTCAATTCATTCATACGGGTGAATTTGATGGAAATGTGAGTGAGAGTGATCTTGAAGATCTGTCATTGCTTATTGATGAGCACCTAAAGGAAGTCAAACAAGAAATCAAATGGATTCAAGACCAAACCGAATCCCAAGATGAAGTTTGA 501 0.3713 MANRNTKLDYITDDSKRKATFRKRKQGIIKKINEITILCGIDACGIIYDENNEQSAVCPSKEGVLMVLDRFRNFPELEQRKVTVDHEGFLRQSIEQSQEKLNKQKENSRKKEMNEIICQFIHTGEFDGNVSESDLEDLSLLIDEHLKEVKQEIKWIQDQTESQDEV* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2975 166 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal2g2975 166 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Mal2g2975 166 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 163 - -
Mal2g2975 166 PANTHER MADS BOX PROTEIN 3 163 - -
Mal2g2975 166 Gene3D - 13 122 IPR036879 GO:0003677|GO:0046983
Mal2g2975 166 Coils Coil 91 114 - -
Mal2g2975 166 SUPERFAMILY SRF-like 4 94 IPR036879 GO:0003677|GO:0046983
Mal2g2975 166 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
Mal2g2975 166 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal2g2975 166 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal2g2975 166 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal2g2975 166 CDD MADS_SRF_like 4 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2975 Mal-Chr2 40943370 40944198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2975 1 149 Type I MADS-box Gene Family AT3G05860 40.940 1.46e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g2975 SRF-TF 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2975 - - mtr:MTR_2g035580 206.453