Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2974 ATGGCTAGAAATAAGGTGAAACTTGCATACATAACCAATCCATCGAACAGAAAGGCATGCTACAAAAAAAGGAAAACAGGTTTACTTAAGAAGCTTAATGAAATCAGCACTCTTTGTGGTATTGAAGCATGTGCAATAATCTTTGGTGAAAACAATGCTCAACCAGAGGTTTGGCCACCCGGTCCGAGCGCAAGCAATATATTATCCAAGTTCCAACATTTGCCGGAACACGAACGAAACAACAAGATGGTGGATTTGAAGGGCCACTTGAACCATAGCATAGCTAAATCCCAAAAGTTGTTGAGAAAACAAATGGAGGAAAACAAGAAGAAGGAATTTGCCCATTTCATTAGTAATGTATTTACTACCGGAGTATATCATACTGGGGATGTGAGTGCGAACGAACTTAATGATCTGATGATGTTTATTGATAGCAATCTGGAAGATATCGACCGTAGGTTGAAATCGATGGAAGTCCAATCTCAAGAGGAAACTGAAAATGGAATGGAAGCCATGAATGGAATAGAACAGGAGAGTAATAAGGGTAATGAGCTAGGGTTGGTGAATGTAGGAGATTTGGAGACAAATATGGGTCATGGTGCTGATGTCCAAGGTTTGGAGAATATGAATTGTGGTATGTCCAATTGGGACGTCTCCATGCTACCATTTTATGATGTTAATATGGACACATCTGGTCTTTGGTCTAACTAG 711 0.398 MARNKVKLAYITNPSNRKACYKKRKTGLLKKLNEISTLCGIEACAIIFGENNAQPEVWPPGPSASNILSKFQHLPEHERNNKMVDLKGHLNHSIAKSQKLLRKQMEENKKKEFAHFISNVFTTGVYHTGDVSANELNDLMMFIDSNLEDIDRRLKSMEVQSQEETENGMEAMNGIEQESNKGNELGLVNVGDLETNMGHGADVQGLENMNCGMSNWDVSMLPFYDVNMDTSGLWSN* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2974 236 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677|GO:0046983
Mal2g2974 236 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 169 - -
Mal2g2974 236 PANTHER MADS BOX PROTEIN 3 169 - -
Mal2g2974 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal2g2974 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal2g2974 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal2g2974 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal2g2974 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal2g2974 236 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal2g2974 236 Coils Coil 147 167 - -
Mal2g2974 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Mal2g2974 236 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2974 Mal-Chr2 40929011 40930083 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2974 1 155 Type I MADS-box Gene Family AT5G48670 44.375 1.61e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g2974 SRF-TF 2.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2974 - - mtr:MTR_2g016210 318.546