Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2971 ATGGCTAGAAAAAGGGTGAAACTTGCATACATAGCATGTGACTCGAAGAGGAGGATAACATTTAGAAAGAGGAAAAGTGGTATCATGAAGAAGGCTAATGAAATTAGCACCCTTTGTGGCATAGAAGCCTGTGCTATAATATACGAGAAAAATAATCCTCAAGCAGAGGTTTGGCCATCAGATTCAGGGGTTAGAAGTGTGCTATCTAGGTTTAGAAGTTTGGATGGAGTGGAACAAAGCAAAAGGATGGTGGATCAAGAGGTCTTTTTGAGGAAGAGCGTTGCAAAAGTCTATGAGCAGTTGAAGAAAGAGAGGGAGGAAACTAGAAAGATGGAAATGGCCAATATTATTGATCATTTCATTCATACTACAGAATTTAATGGTAGTTTAATGAACAAATATGATCTTAATGATCTATCATCTTTTATTGATGAGAATCTAAAGAAGATCGATCAAAAAATGAAAGAAATGTTAATCAAAGATCGAGAGGAGGTTGGGAATTGA 504 0.3651 MARKRVKLAYIACDSKRRITFRKRKSGIMKKANEISTLCGIEACAIIYEKNNPQAEVWPSDSGVRSVLSRFRSLDGVEQSKRMVDQEVFLRKSVAKVYEQLKKEREETRKMEMANIIDHFIHTTEFNGSLMNKYDLNDLSSFIDENLKKIDQKMKEMLIKDREEVGN* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2971 167 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 52 IPR002100 GO:0003677|GO:0046983
Mal2g2971 167 Coils Coil 91 111 - -
Mal2g2971 167 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal2g2971 167 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal2g2971 167 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal2g2971 167 SUPERFAMILY SRF-like 3 93 IPR036879 GO:0003677|GO:0046983
Mal2g2971 167 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 159 - -
Mal2g2971 167 PANTHER MADS BOX PROTEIN 2 159 - -
Mal2g2971 167 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal2g2971 167 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Mal2g2971 167 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Mal2g2971 167 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2971 Mal-Chr2 40910366 40911061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2971 1 166 Type I MADS-box Gene Family AT5G48670 47.619 2.46e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g2971 SRF-TF 5.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2971 - - cam:101496969 229.565