Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2970 ATGACTAGGAAGAAGGTGCAGCTTGCCTACATCACCAATGACTCAAAGAGGAGAGGAACATTCAGGAAAAGAAAAAATGGTTTAATCAAGAAGATTCATGAAATAACCACGCTTTGTGGGATTGAAGCGGCTGCAATAATCGTTGGAGAAAATGATCCTCAGCCAGAGGTTTGGCCTTCGCCGTTGGGAGTCCAAAGGGTGTTGTCAAGGTTTAGGAGATTGCCTGAATTCGAAGTAAGCAAAAAAATGTTTAATCAAGAGAGTTTCTTGAAGCAAAGGATCCAAAAAGCACAAGAACAGCTCAAGAAACAAAGAAATGACAACAAAAGGAATGAAATGACGCAGCTCATGTTTCAATGCCTTAATGCTGGTCAGATCTCTGACAATGTTGAGATGAATGATCTCAATGATATCTCGTGGTTGATTGATCAGAACTTGAAACAAATCGAAAGGAAAATCGAAGAGTCTCAAGCTGAAGAGATTATCCAAAACCAAGCGGAAAATGTGACTACAAGGGAGCAACAAATGGAGAACACTTCTGATGCAATGCTAAGGCAACATCGGTCATTGGATTTCACCAACAACAATATTGGTCATGTACCAAATGGTTTTTGGCCTTAA 621 0.401 MTRKKVQLAYITNDSKRRGTFRKRKNGLIKKIHEITTLCGIEAAAIIVGENDPQPEVWPSPLGVQRVLSRFRRLPEFEVSKKMFNQESFLKQRIQKAQEQLKKQRNDNKRNEMTQLMFQCLNAGQISDNVEMNDLNDISWLIDQNLKQIERKIEESQAEEIIQNQAENVTTREQQMENTSDAMLRQHRSLDFTNNNIGHVPNGFWP* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2970 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal2g2970 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Mal2g2970 206 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 171 - -
Mal2g2970 206 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Mal2g2970 206 PANTHER MADS BOX PROTEIN 2 171 - -
Mal2g2970 206 Coils Coil 87 114 - -
Mal2g2970 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal2g2970 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal2g2970 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal2g2970 206 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal2g2970 206 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Mal2g2970 206 Gene3D - 13 119 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2970 Mal-Chr2 40900190 40901260 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2970 1 154 Type I MADS-box Gene Family AT5G48670 57.792 1.32e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g2970 SRF-TF 6.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2970 - - gmx:100816084 230.335