Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2965 ATGGCTAGAAAAAGGGTGAAACTTGCTTACATAGTATGTGACTCGAAGAGGAGGATAACATTCAGAAAGAGGAAAAGTGGTATCATGAAGAAAATGAGTGAAATTAGCACCCTTTGTGGCATAGAAGCATGTGCTATAATCTACCAAAAAAATAATACTCAACCAGAGGTTTGGCCATCTGATTCAGGGGTTAGAAGTGTCCTATCTAGGTTTGGAAGTTTGGCTGGAGTGGAACAAAGCAAAAGGATGGTGGATCAAGAGGTCTTTTTGAGGAAAAGCATTTCAAAAGTCAACGAGCAGTTGAAGAGACAAAGGGAGGAAACTAGAAAGATGGAAATGACCAATATTGTTGATCATTTCATTCATACTAGAGAATTTAATGGGAATTTAATGAACAAACGTGATCTTAATGATTTTTCATCTTTTATTGATGAGAATCTAAAGAAAGTCGACCAAAAAATGAAAGAAATGTTCATCCAAGATTGA 486 0.3601 MARKRVKLAYIVCDSKRRITFRKRKSGIMKKMSEISTLCGIEACAIIYQKNNTQPEVWPSDSGVRSVLSRFGSLAGVEQSKRMVDQEVFLRKSISKVNEQLKRQREETRKMEMTNIVDHFIHTREFNGNLMNKRDLNDFSSFIDENLKKVDQKMKEMFIQD* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2965 161 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 157 - -
Mal2g2965 161 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal2g2965 161 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal2g2965 161 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal2g2965 161 PANTHER MADS BOX PROTEIN 2 157 - -
Mal2g2965 161 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal2g2965 161 Coils Coil 91 114 - -
Mal2g2965 161 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal2g2965 161 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 52 IPR002100 GO:0003677|GO:0046983
Mal2g2965 161 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Mal2g2965 161 Gene3D - 14 124 IPR036879 GO:0003677|GO:0046983
Mal2g2965 161 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2965 Mal-Chr2 40726090 40726799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2965 1 155 Type I MADS-box Gene Family AT5G48670 49.686 7.30e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g2965 SRF-TF 2.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2965 - - cam:101496969 228.409