Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2940 ATGGAGATATCGTTGTTGAAAATGCTTGTTGACAGCATATCCTCATTTTTGCATTTATCGTTTCCTGGAAACATGAACTCAGAACCAGTCTCAAAATATTACCATAAGGCAGAAGAGATACTTAAGTTATTGAAGCCGATCATTGATGTTTTTGGTAATTCCGAGCCAGCGTCCGATGAAGTGCTTAGTAAGACATTCGAAGAACTTGGTCATGCTGTTGATGAATTAAAGGAGTATGTTGAGAATTGGCACCTATTGTCTAGCAAAATTTACTTTGTTATGCAAGTTGAACCCTTGATATCTAGGATTCGAACTTCAGGTCTCAAGGTCTTGCAGCAGTTGAAGGCTTCAAAGCAATGTCCCAATGATGAATTGAGTTCTGAACATTTGGAGCTTTTGGGACTTGAAGAAACCTCATCTGTAATTAAGGAAGCTATTATGGAACAACTAGATGGTGAAGGACCCAGTTCAGAGATCCTGGAAAAAATTGCTGATAGCTTGGGACTTAAATCTAACGAGGAGGTTCTAATTGAGGCTGTGGCCCTAGAAAAATTGAAGGAGAATGCTGAACAGACTGAAAAGACTGCAGAAGCTGAATACATTGATCAAATTATTTCTGTTGTAACTCTTATGCATGAGCGACTTGTTCTGCTTAAGCAATCCCAGAGTAGCAGTCCAATTCCAGTACCTGCTGATTTTTGTTGTCCACTTTCTTTGGAGTTGATGACTGATCCAGTGATCGTGGCCTCAGGGCAAACCTATGAGCGGGCATTTATCAAGAACTGGATTGATCTCGGTCTTACTGTTTGTCCAAAGACACATCAGACTCTGGCTCACACCAACCTAATACCTAACTATACTGTAAAGGCACTAATTGCAAACTGGTGTGAATCAAACAATGTGAAGCTGGTTGATCCCACAAAGTCCACAACCTTAAATCAAGTGTCTATCCTTCATGGGTATATTGAGTCTGGTACAACCAGGGAATCTCCTGTTTTCCCTCATTCCAGGAGCAATCTACCATCCTCACCTGAGTCGGCTCGTTCTCGTTCTTTTAATTCACCAGGTAATAACATACCTTCTTCTGGTGGTATCCAGCGAGAGGTAACATCACCTTTGCACCCTCGTTCAATTTCAGAAGGTTCCTTGAGTGGCATAGTTAATGGGCAGTATATGGATGCTGCTAGAACATCACCCACAGGTTTAGATGACAGGTCTGCTAGCTCAGATGAAAGCAGTATCGATTCAATGGGCCAACCATCAATATCACCATCTAGAAGGGAATCTTCCGGTGCCTTCAGCTCCGAACTATCTCAAAACCATGTTAGAGCTGTATCTGATTCTGGTGCATTTTCTGATGCAAATTTTCAAGAAACGCAAGGTGATGACAGCAATGCTTCTCAGCTGTCAACAAGTCCAGGCTACAGTAGAGAAACTTCTGGCGAATTAAATCCAGTACCAGATGCTTCTGGTTCTGCTCCCATGCCATCTATGCAGAGAGAACCTGAGTTCCCACCCCGATTGATGGAGGCAAGGTCTCGAAGCCAAGCTATATGGAGGAGGCCATCAGAAAGGCTTGTTCCTAGGATAATATCTTCTTCTGCTATTGAACCAAGAGTTGATCTTTCTGGTATTGAGGCACAGGTTCGGAGTCTAGTTGAAGGCTTGAGGAGCATTGATCTTGATATTCAGAGAGAGGCAACTTCAGAAATCCGCCTTCTTGCTAAGCACAATATGGATAATCGAATTGCAATTGCAAATTGTGGAGCCATTAACATATTAGTTGACTTACTTAAATCAGCTGATTCAAGGGTCCAGGAAAATGCTGTTACAGCACTTCTCAACTTATCGATCAATGATAACAACAAAACTGCAATTGCAAATGCCGGTGCAATTGAACCTCTGATTCATGTTCTTGAAAATGGGAGCCCAGAAGCCAAGGAGAATTCAGCGGCCACTCTTTTCAGCTTGTCGGTGATTGAGGAAAATAAGGTTAACATAGGGAGGTCTGGGGCAATTAGACCACTCGTAGATTTATTAGGATATGGAACTCCAAGGGGAAAAAAGGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCACGAGAATAAGAATCGGATTGTGCAAGCTGGTGCCGTGAAGCACCTCGTGGAGTTGATGGACCCAGCGGCTGGAATGGTTGACAAGGCTGTTGCTGTCTTAGCAAATCTTGCCACAATTCCAGAAGGAAGAATTGCAATTGGTCAGGAAGGTGGGATTCCTGTTCTAGTTGAGGTTGTTGAGTTGGGTTCTGCTAGAGGAAAGGAGAATGCAGCAGCAGCTCTTCTACATCTTTGCTTACACAGTAACAGATTCTTAAGCATGGTGCTCCAACACGGTGCCGTACCACCATTAGTAGCTTTATCACAGTCAGGCACACCAAGGGCCAAAGAAAAGGCTCAAGCTCTACTTAATCAATTTAGAAGTCAAAGACATGGCAATTCTGGGAGGGGCTGA 2499 0.4298 MEISLLKMLVDSISSFLHLSFPGNMNSEPVSKYYHKAEEILKLLKPIIDVFGNSEPASDEVLSKTFEELGHAVDELKEYVENWHLLSSKIYFVMQVEPLISRIRTSGLKVLQQLKASKQCPNDELSSEHLELLGLEETSSVIKEAIMEQLDGEGPSSEILEKIADSLGLKSNEEVLIEAVALEKLKENAEQTEKTAEAEYIDQIISVVTLMHERLVLLKQSQSSSPIPVPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTHQTLAHTNLIPNYTVKALIANWCESNNVKLVDPTKSTTLNQVSILHGYIESGTTRESPVFPHSRSNLPSSPESARSRSFNSPGNNIPSSGGIQREVTSPLHPRSISEGSLSGIVNGQYMDAARTSPTGLDDRSASSDESSIDSMGQPSISPSRRESSGAFSSELSQNHVRAVSDSGAFSDANFQETQGDDSNASQLSTSPGYSRETSGELNPVPDASGSAPMPSMQREPEFPPRLMEARSRSQAIWRRPSERLVPRIISSSAIEPRVDLSGIEAQVRSLVEGLRSIDLDIQREATSEIRLLAKHNMDNRIAIANCGAINILVDLLKSADSRVQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLENGSPEAKENSAATLFSLSVIEENKVNIGRSGAIRPLVDLLGYGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIPEGRIAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSNRFLSMVLQHGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNSGRG* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2940 832 SUPERFAMILY RING/U-box 218 306 - -
Mal2g2940 832 ProSiteProfiles U-box domain profile. 228 302 IPR003613 GO:0004842|GO:0016567
Mal2g2940 832 Pfam Armadillo/beta-catenin-like repeat 619 658 IPR000225 GO:0005515
Mal2g2940 832 Pfam Armadillo/beta-catenin-like repeat 580 617 IPR000225 GO:0005515
Mal2g2940 832 Pfam Armadillo/beta-catenin-like repeat 662 699 IPR000225 GO:0005515
Mal2g2940 832 SMART arm_5 532 576 IPR000225 GO:0005515
Mal2g2940 832 SMART arm_5 701 740 IPR000225 GO:0005515
Mal2g2940 832 SMART arm_5 741 781 IPR000225 GO:0005515
Mal2g2940 832 SMART arm_5 660 700 IPR000225 GO:0005515
Mal2g2940 832 SMART arm_5 619 659 IPR000225 GO:0005515
Mal2g2940 832 SMART arm_5 578 618 IPR000225 GO:0005515
Mal2g2940 832 MobiDBLite consensus disorder prediction 453 486 - -
Mal2g2940 832 MobiDBLite consensus disorder prediction 328 439 - -
Mal2g2940 832 MobiDBLite consensus disorder prediction 453 509 - -
Mal2g2940 832 SUPERFAMILY ARM repeat 549 821 IPR016024 -
Mal2g2940 832 PANTHER U BOX DOMAIN-CONTAINING 8 828 - -
Mal2g2940 832 Pfam U-box domain 229 299 IPR003613 GO:0004842|GO:0016567
Mal2g2940 832 Coils Coil 172 202 - -
Mal2g2940 832 Gene3D - 532 827 IPR011989 -
Mal2g2940 832 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 308 IPR013083 -
Mal2g2940 832 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 671 713 IPR000225 GO:0005515
Mal2g2940 832 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 589 631 IPR000225 GO:0005515
Mal2g2940 832 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 712 753 IPR000225 GO:0005515
Mal2g2940 832 CDD RING-Ubox_PUB 233 275 IPR045210 -
Mal2g2940 832 SMART Ubox_2 232 295 IPR003613 GO:0004842|GO:0016567
Mal2g2940 832 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2940 Mal-Chr2 40195878 40200351 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2940 189 832 U-box Gene Family AT2G23140 61.137 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2940 - - gmx:100811250 1283.47