LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal2g2748	ATGGAAGCAAAGGAGCAAGATGTTTCATTGGGAGCTAACAAATTCCCAGAGAGACAACCAATTGGTATTGCAGCTCAGAGCCATGATGATGGAAAGGACTACAAGGAACCACCACCAGCACCATTGTTTGAGCCTTCTGAGCTCACTTCATGGTCTTTCTACAGAGCTGGGATAGCTGAGTTTGTGGCCACTTTTCTGTTCTTGTACATCACCATCTTGACTGTTATGGGTGTTAACAGATCTGATTCCAAGTGTAAAACTGTTGGTATTCAAGGAATTGCTTGGTCTTTTGGTGGCATGATCTTTGCCCTTGTTTACTGTACTGCTGGTATCTCTGGGGGTCACATAAACCCAGCAGTGACATTCGGTTTGTTCTTGGCAAGGAAATTGTCATTAACCAGGGCGGTGTTCTACATGGTGATGCAGACCCTTGGTGCTATCTGTGGTGCTGGTGTGGTTAAGGGTTTCGAGGGAAAGACCTTTTTCGGAGCTAAAAACGGTGGTGCTAACTTTGTTGCTCCCGGTTACACTAAAGGTGATGGACTTGGTGCTGAGATTGTTGGTACCTTTGTTCTTGTCTACACCGTCTTCTCCGCCACTGATGCCAAGCGTAGCGCCAGAGACTCCCATGTTCCTATTTTGGCTCCATTGCCAATTGGGTTCGCTGTATTTTTGGTGCACTTGGCCACTATCCCAATCACTGGAACTGGTATCAACCCTGCTAGGAGTCTTGGTGCTGCAATTATCTTCAACAAAGACCTTGGTTGGGATGATCACTGGATTTTCTGGGTTGGACCATTCATTGGTGCAGCTCTTGCGGCCCTTTACCACACAGTTGTGATCAGAGCCATCCCTTTCAAATCAAGTTAA	870	0.4655	MEAKEQDVSLGANKFPERQPIGIAAQSHDDGKDYKEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITILTVMGVNRSDSKCKTVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQTLGAICGAGVVKGFEGKTFFGAKNGGANFVAPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDHWIFWVGPFIGAALAALYHTVVIRAIPFKSS*	290

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal2g2748	289	PANTHER	AQUAPORIN OR AQUAGLYCEROPORIN RELATED	1	288	IPR034294	-
	Mal2g2748	289	SUPERFAMILY	Aquaporin-like	47	282	IPR023271	-
	Mal2g2748	289	CDD	MIP	55	280	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mal2g2748	289	Pfam	Major intrinsic protein	47	277	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mal2g2748	289	TIGRFAM	MIP: MIP family channel proteins	59	277	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mal2g2748	289	ProSitePatterns	MIP family signature.	115	123	IPR022357	-
	Mal2g2748	289	PRINTS	Major intrinsic protein family signature	97	121	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mal2g2748	289	PRINTS	Major intrinsic protein family signature	220	242	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mal2g2748	289	PRINTS	Major intrinsic protein family signature	184	202	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mal2g2748	289	PRINTS	Major intrinsic protein family signature	55	74	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mal2g2748	289	PRINTS	Major intrinsic protein family signature	134	153	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mal2g2748	289	PRINTS	Major intrinsic protein family signature	260	280	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Mal2g2748	289	Gene3D	Glycerol uptake facilitator protein.	40	288	IPR023271	-
	Mal2g2748	289	PANTHER	AQUAPORIN PIP 1-3	1	288	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal2g2748	Mal-Chr2	35928097	35930068	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal2g2748	1	289	Major Intrinsic Protein MIP	AT4G23400	84.083	4.37e-169	468

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal2g2748	K09872		-	gmx:100791447	551.977

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal2g2748	2	35928097	35930068	Mal2g2748	2	35928097	35930068	ECH
	Mal2g2748	2	35928097	35930068	Mal8g1156	8	17986105	17988343	PCT