Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2708 ATGGAAAATAAGTTCCAAAACTCAACTTTACTTGAATTATCAGCAACTGATGATATTGAAGCATTCAAAAGGGAAGTAGAAGAAAAGGGTTATGATGTCAATGAGGCAGGGTTTTGGTATTGTAGAAAAATTGGATCAAAGCAAATGTGTTATGAAAAGAGAACACCCCTTATGATTGCTTCATTGTTTGGAAGCATTAGGGTGGTGAAATATATCATTGAAACAAACATGGTTGATGTGAACATGTCAATTGGCAGTGAAAATGTCACTGCATTACATTGTGCTGTTGCTGGTGGCTCTAAATCCAAATTTGAGATTATTAAGCTCTTGCTTGACGCTGGAGCAGATGCTGATTCCCTTGATGAAAATATTAAGCAGAATTTTTTGGTGCCTAATTCAAAAGAGTTAGAAGCTGAGAAGAAAGAGTTAGGATATGCTATTGATATATCATTGCCTGATATAAACAATGGTGTTTTTGGAACAGATGAGTTTAGAATGTATAGTTTCAAGGTGAAGACTTGTTCAAGGGGTTACTCTCATGATTGGACTGAGTGTCCATTTGTTCATCCAGGGGAGAATGCAAGGAGGAGAGATCCAAGGAAGTATCCATATAGCTGTGTTCCGTGCCCCGAGTTTCGCAAAGGGACATGCCAGAAGAAAGATGCATGTGAGTATTCACATGGTGTTTTTGAGTCTTTGCTTCATCCTTCACAATACAGAACAAGGCTTTGTAAAGATGAGATTAGGTGTTCTAGGAAAGTGTGTTTCTTTGCACACAAGCATGAAGAGTTGAGGCCTTTATATGCTTCTACTGGTTCAGCTATGCCTTCACAAGAATCTTTACCAATTTCAAATGTCTCAACACCACCTATGTCTCCATTGGTAGTTGGTTCATCTCCTAAGAGTGGAAATTACATGGGGCAGAATAAAATCAATCTCACTCCACCTTCATTGCAGCTGAAAAATGGTTTGAGTGCAAGGGATTTGTATCAAGAATTGGACCTGTTACATGGTCTTTCAATGCAACCTTCAACTCCTACTCAATTGCAATCTATGAGTAGGCTTCAGTTGAACCAAAACAGGAACCATGTTCAAGCAAGTTATCCATTCAACAACGTTGTTTCCTCTCCTATGAGAAAAGCATCAGCATTTGGATTTGATTCATCAGCTGCTATGGCTGCAGCAGTGATGAATTCAAGGTCTTCAGCCTTTGCGACACGAAGCCAAAGTTTTATGGATCGCGGTGTGCCAAGACACCATATCGGTGCTTCCGAATCCAACACTAGGATGAACTCTGGTCTCTCAGATTGGATTTCTCATGATTGGGATGAGCTGCATAAGTTGAAAAAATCTGCTTCTTTTGGATTTAGAAATAATATGGCTGCTGCTTCGCCCGTGGCACGGCCAGAACATGGTGAACCAGATGTCTCGTGGGTTCATTCGCTTGTTAATGATGTTTCCTCTGAGAGTTCTGAGTTATTTGGTGCTGAGAAGCAGCATTATGATCTCTATAAACAAATGTTATCACCATGGGCAGAGCAACTGGTAGCATAA 1554 0.4009 MENKFQNSTLLELSATDDIEAFKREVEEKGYDVNEAGFWYCRKIGSKQMCYEKRTPLMIASLFGSIRVVKYIIETNMVDVNMSIGSENVTALHCAVAGGSKSKFEIIKLLLDAGADADSLDENIKQNFLVPNSKELEAEKKELGYAIDISLPDINNGVFGTDEFRMYSFKVKTCSRGYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKKDACEYSHGVFESLLHPSQYRTRLCKDEIRCSRKVCFFAHKHEELRPLYASTGSAMPSQESLPISNVSTPPMSPLVVGSSPKSGNYMGQNKINLTPPSLQLKNGLSARDLYQELDLLHGLSMQPSTPTQLQSMSRLQLNQNRNHVQASYPFNNVVSSPMRKASAFGFDSSAAMAAAVMNSRSSAFATRSQSFMDRGVPRHHIGASESNTRMNSGLSDWISHDWDELHKLKKSASFGFRNNMAAASPVARPEHGEPDVSWVHSLVNDVSSESSELFGAEKQHYDLYKQMLSPWAEQLVA* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2708 517 SUPERFAMILY Ankyrin repeat 3 123 IPR036770 -
Mal2g2708 517 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 336 515 - -
Mal2g2708 517 ProSiteProfiles Ankyrin repeat region circular profile. 87 122 - -
Mal2g2708 517 SMART ANK_2a 87 119 IPR002110 GO:0005515
Mal2g2708 517 SMART ANK_2a 52 82 IPR002110 GO:0005515
Mal2g2708 517 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 5 336 - -
Mal2g2708 517 Gene3D - 2 143 IPR036770 -
Mal2g2708 517 Pfam Ankyrin repeats (3 copies) 41 118 IPR002110 GO:0005515
Mal2g2708 517 SMART c3hfinal6 238 261 IPR000571 GO:0046872
Mal2g2708 517 SMART c3hfinal6 203 229 IPR000571 GO:0046872
Mal2g2708 517 ProSiteProfiles Zinc finger C3H1-type profile. 203 230 IPR000571 GO:0046872
Mal2g2708 517 Gene3D - 204 266 - -
Mal2g2708 517 PANTHER UNKEMPT FAMILY MEMBER 336 515 IPR045234 -
Mal2g2708 517 PANTHER UNKEMPT FAMILY MEMBER 5 336 IPR045234 -
Mal2g2708 517 ProSiteProfiles Ankyrin repeat profile. 87 122 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2708 Mal-Chr2 35210132 35211685 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2708 138 342 C2H2 Transcription Factor Family AT5G12850 54.701 7.64e-77 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal2g2708 Ank_2 1.4e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2708 - - mtr:MTR_3g070880 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g2708 2 35210132 35211685 Mal8g1101 8 16929264 16931324 ECH
Mal2g2708 2 35210132 35211685 Mal2g2708 2 35210132 35211685 ECH