Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2678 ATGGGTGGTAATACTACTTCCCCTTGTGCTTCATGCAAACTCCTTAGACGCCGTTGTGCTAAGGATTGTATATTTGCTCCTTATTTCCCTTCACATGATCCTCAAAAATTTGCAATAGTTCACAAGGTTTTTGGTGCCAGCAACGTTAGCAAAATGCTCCAGGAACTTCCTGTTCAACGGAGATCAGATGCAGTGAGCAGTTTAGTGTATGAAGCAAATGCAAGAGTGAAGGACCCTGTTTATGGTTGTGTTGGAGCCATATCGTACCTTCAAAACCAAGTCTCTGAGCTTCAAATGCAGCTTGCAGTAGCTCAAGCAGAGATACTCTGCATGATGCAACGTGATGATCAACCAATAATGCAAAATCAAGAAATGACCCTTGATCATAAATCTTATGATCTCCCTCAGTATCTCAATTTTTCTTCTTCAAGCAATGTAATTCATCATGATTCTCTCTCAAGAGAGAGAATTTTTTGA 477 0.4025 MGGNTTSPCASCKLLRRRCAKDCIFAPYFPSHDPQKFAIVHKVFGASNVSKMLQELPVQRRSDAVSSLVYEANARVKDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCMMQRDDQPIMQNQEMTLDHKSYDLPQYLNFSSSSNVIHHDSLSRERIF* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2678 158 Coils Coil 87 107 - -
Mal2g2678 158 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Mal2g2678 158 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Mal2g2678 158 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 121 - -
Mal2g2678 158 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 6 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2678 Mal-Chr2 34460691 34461648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2678 1 134 AS2 family AT2G30130 76.087 4.49e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mal2g2678 LOB 3.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2678 - - pop:7462094 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g2678 2 34460691 34461648 Mal8g1072 8 16532889 16534133 ECH
Mal2g2678 2 34460691 34461648 Mal2g2678 2 34460691 34461648 ECH
Mal2g2678 2 34460691 34461648 Mal8g1072 8 16532889 16534133 PCT