Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2587 ATGGTACAAACGCTTTCAATGCCTGTGGCACCTTCATTCTCAATCATCTCCAAAGGCCATGGTCACTTCTCCAATAGAGTTTCCTTCCCTGTTCTCAACACTCCCAAACCAAAGGTTCAAAGGCTAAACATTGTGTGCGTTCGTGTTGGAGGTGTTGAAATTCCAAACAACAAGAGAATTGAATTTTCGTTGCAGTACATTCATGGAGTTGGAAGGAACAGAGCGAGACAGATTCTAACTGATATCAATATGGAGAATAAAGTCACAAAGGAATTGAGTGAAGAAGAGCTTATTAGTCTCAGGGATGAAGTTTCCAAATACATAACTGAAGGAGATTTGAGAAGGTTTAATGCACTTAATATTAAGAGATTGAAGGATATTCAGTGTTACAGAGGAATAAGGCATATTCAGGGACTTCCTTGTAGAGGACAGCATACCAAGAATAATTGCAGGACATTGAAGGGTAAGAAGGTTACTGTTGCTGGAAAGAAGAAAAAGTAA 501 0.3912 MVQTLSMPVAPSFSIISKGHGHFSNRVSFPVLNTPKPKVQRLNIVCVRVGGVEIPNNKRIEFSLQYIHGVGRNRARQILTDINMENKVTKELSEEELISLRDEVSKYITEGDLRRFNALNIKRLKDIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKKVTVAGKKKK* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2587 166 Hamap 30S ribosomal protein S13 [rpsM]. 46 162 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mal2g2587 166 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 165 - -
Mal2g2587 166 Gene3D 30s ribosomal protein s13, domain 2 116 166 IPR027437 -
Mal2g2587 166 PANTHER 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL 1 165 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mal2g2587 166 Gene3D - 47 115 - -
Mal2g2587 166 Coils Coil 90 110 - -
Mal2g2587 166 ProSiteProfiles Ribosomal protein S13 family profile. 49 155 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mal2g2587 166 Pfam Ribosomal protein S13/S18 48 152 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mal2g2587 166 ProSitePatterns Ribosomal protein S13 signature. 131 144 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Mal2g2587 166 SUPERFAMILY S13-like H2TH domain 47 158 IPR010979 GO:0003676
Mal2g2587 166 TIGRFAM uS13_bact: ribosomal protein uS13 48 157 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2587 Mal-Chr2 33022510 33023170 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2587 47 164 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 33.566 1.39e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2587 K02952 - gmx:100500355 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g2587 2 33022510 33023170 Mal2g2587 2 33022510 33023170 ECH