Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2543 ATGGCAGCTATGATGGATTATTACAGTAACATGCAACAATTTCACAGCTCAGATCCATTTAGAGGTGAATTAATGGAAGTTCTTGAACCTTTTATCAAAAGTCCTTCTTCAACTTCATCTTCAACACCATCACCTTCTTATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCTCTCCACCTTCTTTCTCTTCTCTCCCTCCTTTCTACACAGAGCAAAACTTCATAGGCTTTGCTCAACCATCTTCTTCTTCTCTTCTTGGTCTCAACCACTTAACCCCATCTCAAATCAACCAAATCCAAGCACAAATCCAACACCAAAACTTTGTACAACAACAACAACATGTACAACAGCAACAGCAACAACAACAACGTTGTCTCAGTACTACTTTGAGTTTTCTGAGTCCAAAATCGATCCCTATGAAGCACGTGGGTGGAAATGCTTCAAAACCCACGAAGCTATACAGAGGGGTGAGACAAAGGCACTGGGGAAAATGGGTAGCTGAGATAAGACTTCCAAAGAACCGTACAAGGCTTTGGCTTGGTACCTTTGATACAGCAGAAGAAGCTGCTTTGGCTTATGATAAAGCTGCTTATAAGCTTCGTGGTGACTTTGCTAGGCTTAATTTCCCGAATTTGAAGCACCAAGGTTCGGTTATTGGTGGTGAGTTTGGTGAGTTTAAGCCTCTTCCTTCCTCTGTTGATGCTAAGCTTCAAGCTATTTGTGAAGGTTTGGCTGAGATGCAGAAACAGGGGAAGGTGGAGAAGCCTAAGAAGACGCCGAAGTCGAAAGCTGCTTCCAAGGTGGCTCCTAAGGAAACTGTTGATGATTTGAAGAAGGGTTCAGATGAGTGTTGTAAGGTTGAAGAAGTTTCGGTGATAACTGAGAGTGAAGGTTCTGAAGGTTCTTCACCACTTTCAGATCTAACTTTTGGTGATGTTGGTGAGCCACAGTGGGAGGGTGATTCAGAAAATTTTAATTTGCTGAAGTACCCTTCTTATGAGATTGATTGGGATTCTCTGTGA 1077 0.4169 MAAMMDYYSNMQQFHSSDPFRGELMEVLEPFIKSPSSTSSSTPSPSYSSSSSSSSSSSSSSSSSSSSSSSSSSSLSPPSFSSLPPFYTEQNFIGFAQPSSSSLLGLNHLTPSQINQIQAQIQHQNFVQQQQHVQQQQQQQQRCLSTTLSFLSPKSIPMKHVGGNASKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLKHQGSVIGGEFGEFKPLPSSVDAKLQAICEGLAEMQKQGKVEKPKKTPKSKAASKVAPKETVDDLKKGSDECCKVEEVSVITESEGSEGSSPLSDLTFGDVGEPQWEGDSENFNLLKYPSYEIDWDSL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2543 358 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 357 - -
Mal2g2543 358 MobiDBLite consensus disorder prediction 267 293 - -
Mal2g2543 358 PRINTS Ethylene responsive element binding protein signature 194 210 IPR001471 GO:0003700|GO:0006355
Mal2g2543 358 PRINTS Ethylene responsive element binding protein signature 172 183 IPR001471 GO:0003700|GO:0006355
Mal2g2543 358 Gene3D AP2/ERF domain 171 229 IPR036955 GO:0003700|GO:0006355
Mal2g2543 358 Pfam AP2 domain 172 220 IPR001471 GO:0003700|GO:0006355
Mal2g2543 358 CDD AP2 170 230 IPR001471 GO:0003700|GO:0006355
Mal2g2543 358 MobiDBLite consensus disorder prediction 311 334 - -
Mal2g2543 358 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 357 - -
Mal2g2543 358 MobiDBLite consensus disorder prediction 33 77 - -
Mal2g2543 358 SUPERFAMILY DNA-binding domain 171 228 IPR016177 GO:0003677
Mal2g2543 358 ProSiteProfiles AP2/ERF domain profile. 171 228 IPR001471 GO:0003700|GO:0006355
Mal2g2543 358 SMART rav1_2 171 234 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2543 Mal-Chr2 32342305 32343381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2543 1 358 AP2-EREBP Transcription Factor Family AT1G78080 50.388 4.01e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal2g2543 AP2 8.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2543 K09286 - gmx:100800478 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g2543 2 32342305 32343381 Mal2g2543 2 32342305 32343381 ECH
Mal8g2502 8 56556322 56557413 Mal2g2543 2 32342305 32343381 PCT