Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2478 ATGGAACCGTCTGAAGAATCTCAATCAATTGGTTCTTCCATCAAAGACCTACAATTGGGTTCTTCTCACATTGAACCTCTTTCCCCTGTTTCCAACCATGATCACCATGATCCTGAAGCCTCAGATCTCAATCAATTGACCCAACTTGATGATGAGCTTCAGAATAAGTTGGATTTGAAAGATGAGGGTGAAATTGATGATAAAGCTTCAAACTTTGAAGTTGGTGATGAAAAATTGTGTGATGAAGTTGCTGCCCTAGAATCTGATAAGGGACAAGTGTGTCATGATGATGATGATGATGATGGATGGAATGGTGATGATGAGGTGAGTGGCTTGATTGAGAATGTGAATGAGAAAGTGAGTGGTGATGTTGATGATAAAGGTTTAAACTTTGAAGTTGGTGGTGAAAAATATGCCCCAGAATCTGATAAGGGACAAGGGTTTCATCAAGATGATGATGATGGTTGGAATGGTGATTATGATGGTTGGAATGTTGATGATGAGGTGGGTGATTGGATTGAGAATGTGAATGACAAGGTGAGTGGAGATGTTGATGAAGTGGAGAACAAGAATGAAAGTAGCAATGGTGGAGCTGAACAGTATCCATTGAGGCCTGAAGCTGAAGACTGTTCTTTTTATCTCAAAACTGGGACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCTGTTAGGAGAAGAAACCAGGCTTTTAAAGAGAGGGCAGGAGAAAGAGATGAATTGGAGGAAAGATCAAGCCAGACAGAATGCAAGTATTATTCAAGATCTGGGGGTTGTAAGTTTGGAAAGGATTGTAAATTTGATCACACCAGAGGAAAGTTTTCAGCAGTTCAAGTTTTAGAGCTTAACTTCCTTGGCCTACCTATTCGTTTGGGTGAGAAAGAATGCCCTTATTACATGCGCACCGGTTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCAGATCCTACATCTCTTGGAGGGTATGATTCCGCTTCAGGATATGGTAATGAAAGTTCTATTTCATTGCAAGATGTGTCACAATCATCTACACCTCCATGGTCTTCTACGAGAAAATTCAATGAAACTGCTCCTTTTGTGCCAATCGCAATTTCACTGACTCCAGGGGCTTCTCCCCGAAGTTCTGACTGGAATGGATATCAGGCACCTTTCTATTTATCTGAGAGGAGTATGCATCCACCTTCACCATATGATGTGAACAATATAGCTATGGAAACAAATGCTTATATGCACCGTCATAAGCATATGCCAGTTGAAGAGTTTCCAGAAAGACCTGGCGAACCCGAATGCAGTTTCTTCTTAAAAACTGGGGATTGCAAATTTAAATCCCATTGCAAATTTCATCATCCAAAGAATCTGATTACAAAATTACCTCCTTGCAACCTAAGTGACAAGGGTTTGCCTTTGAGACCTGGCCAGAATGTGTGCACTCATTACAGCCGATATGGAATTTGCAAATTTGGGCCAGCTTGTAAGTATGACCACCCGATAAACCTACCGCCCCCAACTATGCCTGGACTTTATCAACAATCCTCTCACACAAACCCGGCCAGTATTGAGGAGGCTGGAAATGGAGGTGCTAGTGATGCAACAACTTAA 1626 0.4127 MEPSEESQSIGSSIKDLQLGSSHIEPLSPVSNHDHHDPEASDLNQLTQLDDELQNKLDLKDEGEIDDKASNFEVGDEKLCDEVAALESDKGQVCHDDDDDDGWNGDDEVSGLIENVNEKVSGDVDDKGLNFEVGGEKYAPESDKGQGFHQDDDDGWNGDYDGWNVDDEVGDWIENVNDKVSGDVDEVENKNESSNGGAEQYPLRPEAEDCSFYLKTGTCKFGFNCKFNHPVRRRNQAFKERAGERDELEERSSQTECKYYSRSGGCKFGKDCKFDHTRGKFSAVQVLELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTSLGGYDSASGYGNESSISLQDVSQSSTPPWSSTRKFNETAPFVPIAISLTPGASPRSSDWNGYQAPFYLSERSMHPPSPYDVNNIAMETNAYMHRHKHMPVEEFPERPGEPECSFFLKTGDCKFKSHCKFHHPKNLITKLPPCNLSDKGLPLRPGQNVCTHYSRYGICKFGPACKYDHPINLPPPTMPGLYQQSSHTNPASIEEAGNGGASDATT* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2478 541 ProSiteProfiles Zinc finger C3H1-type profile. 251 279 IPR000571 GO:0046872
Mal2g2478 541 SUPERFAMILY CCCH zinc finger 438 461 IPR036855 GO:0046872
Mal2g2478 541 MobiDBLite consensus disorder prediction 1 52 - -
Mal2g2478 541 Gene3D - 419 507 - -
Mal2g2478 541 Gene3D - 247 333 - -
Mal2g2478 541 MobiDBLite consensus disorder prediction 513 541 - -
Mal2g2478 541 PANTHER PROTEIN PHOSPHATASE RELATED 28 540 - -
Mal2g2478 541 MobiDBLite consensus disorder prediction 183 202 - -
Mal2g2478 541 MobiDBLite consensus disorder prediction 1 28 - -
Mal2g2478 541 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 435 460 IPR000571 GO:0046872
Mal2g2478 541 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 255 276 IPR000571 GO:0046872
Mal2g2478 541 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 300 323 IPR000571 GO:0046872
Mal2g2478 541 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 481 505 IPR000571 GO:0046872
Mal2g2478 541 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 208 230 IPR000571 GO:0046872
Mal2g2478 541 SUPERFAMILY CCCH zinc finger 298 324 IPR036855 GO:0046872
Mal2g2478 541 SUPERFAMILY CCCH zinc finger 204 233 IPR036855 GO:0046872
Mal2g2478 541 ProSiteProfiles Zinc finger C3H1-type profile. 479 507 IPR000571 GO:0046872
Mal2g2478 541 ProSiteProfiles Zinc finger C3H1-type profile. 204 232 IPR000571 GO:0046872
Mal2g2478 541 MobiDBLite consensus disorder prediction 511 541 - -
Mal2g2478 541 SUPERFAMILY CCCH zinc finger 254 280 IPR036855 GO:0046872
Mal2g2478 541 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 28 540 - -
Mal2g2478 541 ProSiteProfiles Zinc finger C3H1-type profile. 297 325 IPR000571 GO:0046872
Mal2g2478 541 ProSiteProfiles Zinc finger C3H1-type profile. 433 461 IPR000571 GO:0046872
Mal2g2478 541 SMART c3hfinal6 479 506 IPR000571 GO:0046872
Mal2g2478 541 SMART c3hfinal6 433 460 IPR000571 GO:0046872
Mal2g2478 541 SMART c3hfinal6 251 278 IPR000571 GO:0046872
Mal2g2478 541 SMART c3hfinal6 297 324 IPR000571 GO:0046872
Mal2g2478 541 SMART c3hfinal6 204 231 IPR000571 GO:0046872
Mal2g2478 541 SUPERFAMILY CCCH zinc finger 477 505 IPR036855 GO:0046872
Mal2g2478 541 Gene3D - 173 241 - -
Mal2g2478 541 MobiDBLite consensus disorder prediction 119 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2478 Mal-Chr2 31321637 31325665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2478 429 528 C2H2 Transcription Factor Family AT3G02830 45.545 3.41e-18 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal2g2478 zf-CCCH 1.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2478 - - gmx:100776363 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4020 5 109931550 109935086 Mal2g2478 2 31321637 31325665 ECH
Mal2g2478 2 31321637 31325665 Mal2g2478 2 31321637 31325665 ECH
Mal5g4020 5 109931550 109935086 Mal2g2478 2 31321637 31325665 PCT