Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2477 ATGGCAGACTCAAACGGCGACGTATTCCCATGGCTAAAATCCATGCCAGTAGCACCCGAATACCGACCCACCCCAGCAGAATTCGAAGATCCAATCGCTTACATTTTCAAGATCGAAAATGAAGCATCCAAATTCGGAATCTGCAAAATCATTCCACCTTTTCCACCTTCCCCCAAGAAAACCACCATCGCTAACCTAAACCGTTCACTCCCCAACTCCACATTCACCACCCGTCAACAACAGATCGGGTTCTGTCCCCGTAAACCCCGACCCGTTAAACGACCCGTTTGGCAGAGTGGGGACCACTACACTTTCACTGAGTTTGAAGCCAAAGCTAAATGGTTTGAAAAAAGTTACATGAACAAGAAGAAGAAAAAGGGTTACAGTGCTCTTGAAATGGAGACATTGTTTTGGAAAGCCACGGTGGATAAACCGTTTTCGGTTGAGTATGCGAATGATATGCCGGGTTCTGCTTTTGCGGCCATGGTGGGTAAACCCTTTTCTTCTGTTGCGAATAGTGCTTGGAATATGAGAGGGGTTTCGAGGGCTAAAGGGTCTTTGTTGAGGTTTATGAAGGAGGAGATACCTGGGGTTACTTCACCTATGGTTTATCTTGCTATGCTTTTTAGTTGGTTTGCTTGGCATGTGGAGGATCATGATTTGCATAGCTTGAATTATCTTCATATGGGTGCTTCTAAGACTTGGTATGGTGTTCCTAGAGATGCTGCTGTTGCTTTTGAGGATGTTGTTAGGGTTCATGGCTATGGTGGAGAGATTAACCCTCTTGTTACATTTTCTATTCTTGGTGAGAAGACCACAGTGATGTCACCAGAAGTGTTTAGTAGTGCAGGTGTTCCATGTTGCAGGTTAGTGCAAAATGCAGGGGAATTTGTTGTGACATTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGTGCAGAGGCGGCAAACATTGCAACACCCGAGTGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATAAACTATCCTCCCATGGTTTCACATTTCCAGCTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAGTCCCTGGGGGAATCAGTGCGGCACCTCGGAGTTCTCGCCTTAAAGATAAGAAGAAGGGTGAAGGAGAAGCGGTAATTAAAGAACTATTTGTCCAGGATGTGTTCCAAAACAATGATCTGCTTCATGTACTCGGAAAAGAGTCTTCTGTAGTACTTCTTCCTCGCAACTCAGTTGACATCTCTAGTCGCTCAAAATTACGTGTTGGATGCCAGCGACTAAAAGTGAACCCTGGATTTTCCTTTAATGTATGCAATTCTGAGGGACTGAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTCAACAGGAATCGTGGAATTGCCCAAGAAAAAAATGTGTGTTCTGTGAAAGATGAATTTACTCTGTTGTGCGAAGGGAAGGGGATTTCCTCATTTGATGCGAATGGTAACAATTCCCCTTCAAGTTCTAAGCAACTTCAAAGAGACAGTGAAAGTGAAACTAGTCAAGTAGATGGATTATCAGATCAGAGACTGTTTTCGTGTGTCACATGTGGACTATTAAACTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATATTTTATGTCTGCTGATCGTAGCTTCTTTAATGATTGGGTTACTGGTTCTGGATTACCTAGTAGCAATAAATTTACTGCGGCACATGAAGATGCACATATTCCTGAGCCAAATATGTATGAAGGGTTGACAAAGAAAAATGCCCAAGAAGAGGATTTAAATTCTGAAGAAGAAAATGGCAATACAGCAGCTACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATATTTCTGACTCTGAGGAAGATGCAGTTGACGACCATGAATCAAATGCAATAAACTCTACATCAGAAAGTTTGCCTTCTAATTTATGTGATTCCAATACTAATCCCATGACTAGACTTGATAAAGATGATACCCTTTCAGAGAGTGCCAGCTATGAAGCACACAGAAATGAGTGTAATTTGAGTCATCATCCTTTGGAACAATCTTTTGAGGAACAGGATTATAAAATCACTTCAGGGGCTGCATTTGAAAATACATGGGCAATGCCTTATTCCACCACGTATAGTTCCCAAGATACTAATGGTGCTGGAAAGTCATTGTCAGTCGAGGCCATGGTTTCTATCAATCATAAAAATGCTTTACTGGTACCACAATGCGATGAAGAGTCGTCTAGAATGCATGTATTCTGTCTAGAGCATGCTGTAGAAGCAGAGCAGCAACTCCGCCCAATAGGTGGAGCCCACATATTTCTCTTATGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAGTTGGTGGCAGAAGATTTGGGGATTGATTACATGTGGAAGAATATTGCCTACAGGCATGGCACCAAGGAGGATGAGAAGAGGATCCAGTCAGCTCTGGATAGTGAGGAAGCGATTCCCGGGAATGGGGACTGGACTGTAAAGCTAGGAATAAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCCCTTTATAGCAAGCAGATGCCTTACAATTCTGTTATATATTATGCATTTGGTCGTAGCTCTCCAGCAAGCTCACCGATAGAACCAAAGGTTTATCAGAGAAGGGCTGACAAGCAGAAAAAGGTTGTTGCTGGCAAATGGTGTGGTAAAGTTTGGATGTCTAATCAGGTCCATCCCCTTTTAGCAAAAAGGGATTCTGAAGATGTTGAGGATGAGAAAAGTTTACGTGGATTGGTATTGCCTGATGTGAAAATTGAGAGATCAGAAAGTACCCCCAAAACTGCAACGGCTATTACAAAATCAGGTAGGAAAAGGAAAACAACCTCAGAGAGTGGACGGCGAACCAGGAAAGGAAATTTTGATGAAAAGGATGTGGTTTTAGATAATTCCGCTGAAGATAAACCCAGTCCTCGGCCAAGAAGGTTTCTTAGAAGCAAGCAAGCTAAGGGTGTTGAGAAAGATAGTGCAGCTTTGCAGAGGAATTGTTCTCCTCCATATCATCATAGAAAACCTTTAAGCAAACAAACCAATTGCACTGAAAGTGATGTAGTTTCTGATGATTCAATTGATGATGATTATCACATGCAAAATAGATGGAGTTTTAATGTCAAAAAAGCTAAATTTACTAACAATGACGTGGTTTCAGATGATGCAGTGGTCTATGATTCCGATTGTCATCAGATGGGACAACTTAGAAGCAAGCAAGATGAAGATACAGAGAGAGACTCAATTTCAGAGGATTCTTTGGATGTTGGTTCTCTTCCGTTGCACAGAAAGACTTCTAGAAGCAAGCATGCCGACTATATTAGTGAAGATGCAATTTCTGATGACCAAATGGAGAATGGTTGTCAGAAACAGAAAAAGAGAATTCCTAAAAGTAGGCAAGGCAAATACCTAGCTGAAAAGGATTCAGTGATATCAGATGACCAACTGGAGCCGAACATGCAGAGGCAGCGACGGAACAATCCTAAAAGTAGGAAAGCCAAAAACCTTGCCGAAGAGGATATTGTATCAGACGATCAAACAAATGTCTATCGTCGCAAGTACCAAAGAAGGACAGTTAAAGTCAGGCAAGCCAAATGTGTACCAGGGGATGATGTAATGTCTGATGATCAATTGGAGGATTCCTATCAAAGGCATAAAACAGGTATTTCTAGAAGGAAGAACAAAGGCATTGATAGAGTAGTGAAAAATGAAATGTCTGATGACCAACTGGAAGATCACTTTCAGAAGCAGCAGAGAAAAATTCCTAGGAGCAGGCGCATTAAACAGACTGATGAGGAAGATATCGATGACTCAGCTGACAATAATGCTCATCTGCTGCATAGGACTCCTAAAAGGAAGAAAGCTAAATGCAAAGATGAAGATGATATGAATTTAGATAACGAAATGGAAGATGATTCTCTTCAGCAGCACAAGAGAACTCTTCCAAGTAAACAATCCAAACGAAAGGCACTTAAACAGATGAAACAATCCAAAACTCTCCAAATGAAAAACCAGACACCTCAGCCAGTGAAACGAGGAGCTCAGAAGAATACTCAGCAAGTAAAGCAGCCGTCTCATTTGCGGAGTAAACAATCTGGCAACTCCAGGGAGCCTAGTTTAGATATGGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGAAAGAGAGTCTCAAAAGCTCAGGAGTCTGAAGTAAAATCAAAAGACAGGCAAACCAAAAGGAAAAGGGCAAATGATGTTACAGCTGCAAAGGTTTCAGCTCGCAATCCCAAATCAGAGGATGAGGAATTAGAATATCAGTGTGACATTGAGGGATGCACCATGAGTTTCGAGTCAAAACAAGAGTTGTTGAATCATAAGAGAAACATCTGTCCAGTAAAAGGTTGCGGAAAAAAGTTTTTCTCGCACAAATATCTGGTGCAGCACCGGCGAGTTCATGAAGATGACCGTCCCCTGAAGTGCCCCTGGAAGGGTTGCAAGATGTCTTTCAAGTGGGCATGGGCTCGAACCGAGCATATTCGAGTCCACACCGGTGCGCGTCCTTATGCATGTGCCGAGCCAGGTTGTGGTCAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTTAGCAAAGAAGAGTCGTCAATAG 4719 0.4232 MADSNGDVFPWLKSMPVAPEYRPTPAEFEDPIAYIFKIENEASKFGICKIIPPFPPSPKKTTIANLNRSLPNSTFTTRQQQIGFCPRKPRPVKRPVWQSGDHYTFTEFEAKAKWFEKSYMNKKKKKGYSALEMETLFWKATVDKPFSVEYANDMPGSAFAAMVGKPFSSVANSAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPRDAAVAFEDVVRVHGYGGEINPLVTFSILGEKTTVMSPEVFSSAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCAEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRVPGGISAAPRSSRLKDKKKGEGEAVIKELFVQDVFQNNDLLHVLGKESSVVLLPRNSVDISSRSKLRVGCQRLKVNPGFSFNVCNSEGLNSSKGFVSDDLVFNRNRGIAQEKNVCSVKDEFTLLCEGKGISSFDANGNNSPSSSKQLQRDSESETSQVDGLSDQRLFSCVTCGLLNFSCVAIVQPREPAARYFMSADRSFFNDWVTGSGLPSSNKFTAAHEDAHIPEPNMYEGLTKKNAQEEDLNSEEENGNTAATALALLASAYGNISDSEEDAVDDHESNAINSTSESLPSNLCDSNTNPMTRLDKDDTLSESASYEAHRNECNLSHHPLEQSFEEQDYKITSGAAFENTWAMPYSTTYSSQDTNGAGKSLSVEAMVSINHKNALLVPQCDEESSRMHVFCLEHAVEAEQQLRPIGGAHIFLLCHPDYPKIEAEAKLVAEDLGIDYMWKNIAYRHGTKEDEKRIQSALDSEEAIPGNGDWTVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGRSSPASSPIEPKVYQRRADKQKKVVAGKWCGKVWMSNQVHPLLAKRDSEDVEDEKSLRGLVLPDVKIERSESTPKTATAITKSGRKRKTTSESGRRTRKGNFDEKDVVLDNSAEDKPSPRPRRFLRSKQAKGVEKDSAALQRNCSPPYHHRKPLSKQTNCTESDVVSDDSIDDDYHMQNRWSFNVKKAKFTNNDVVSDDAVVYDSDCHQMGQLRSKQDEDTERDSISEDSLDVGSLPLHRKTSRSKHADYISEDAISDDQMENGCQKQKKRIPKSRQGKYLAEKDSVISDDQLEPNMQRQRRNNPKSRKAKNLAEEDIVSDDQTNVYRRKYQRRTVKVRQAKCVPGDDVMSDDQLEDSYQRHKTGISRRKNKGIDRVVKNEMSDDQLEDHFQKQQRKIPRSRRIKQTDEEDIDDSADNNAHLLHRTPKRKKAKCKDEDDMNLDNEMEDDSLQQHKRTLPSKQSKRKALKQMKQSKTLQMKNQTPQPVKRGAQKNTQQVKQPSHLRSKQSGNSREPSLDMEEEEEGGPSTRLRKRVSKAQESEVKSKDRQTKRKRANDVTAAKVSARNPKSEDEELEYQCDIEGCTMSFESKQELLNHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYACAEPGCGQTFRFVSDFSRHKRKTGHLAKKSRQ* 1573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2477 1572 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1159 1562 - -
Mal2g2477 1572 PANTHER LYSINE-SPECIFIC DEMETHYLASE 6 1042 - -
Mal2g2477 1572 Pfam jmjN domain 19 52 IPR003349 -
Mal2g2477 1572 ProSiteProfiles Zinc finger C2H2 type domain profile. 1539 1570 IPR013087 -
Mal2g2477 1572 ProSitePatterns Zinc finger C2H2 type domain signature. 1481 1503 IPR013087 -
Mal2g2477 1572 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 1159 1562 - -
Mal2g2477 1572 MobiDBLite consensus disorder prediction 1233 1251 - -
Mal2g2477 1572 SUPERFAMILY Clavaminate synthase-like 163 352 - -
Mal2g2477 1572 MobiDBLite consensus disorder prediction 643 664 - -
Mal2g2477 1572 MobiDBLite consensus disorder prediction 1155 1169 - -
Mal2g2477 1572 MobiDBLite consensus disorder prediction 1266 1302 - -
Mal2g2477 1572 ProSiteProfiles Zinc finger C2H2 type domain profile. 1479 1508 IPR013087 -
Mal2g2477 1572 Gene3D Cupin 11 342 - -
Mal2g2477 1572 ProSiteProfiles Zinc finger C2H2 type domain profile. 1509 1538 IPR013087 -
Mal2g2477 1572 MobiDBLite consensus disorder prediction 1090 1108 - -
Mal2g2477 1572 ProSitePatterns Zinc finger C2H2 type domain signature. 1541 1565 IPR013087 -
Mal2g2477 1572 Pfam JmjC domain, hydroxylase 202 320 IPR003347 -
Mal2g2477 1572 ProSiteProfiles JmjN domain profile. 18 59 IPR003349 -
Mal2g2477 1572 MobiDBLite consensus disorder prediction 947 1051 - -
Mal2g2477 1572 MobiDBLite consensus disorder prediction 1090 1196 - -
Mal2g2477 1572 MobiDBLite consensus disorder prediction 964 1014 - -
Mal2g2477 1572 Gene3D Classic Zinc Finger 1477 1563 - -
Mal2g2477 1572 ProSiteProfiles JmjC domain profile. 169 338 IPR003347 -
Mal2g2477 1572 SMART c2h2final6 1539 1565 IPR013087 -
Mal2g2477 1572 SMART c2h2final6 1479 1503 IPR013087 -
Mal2g2477 1572 SMART c2h2final6 1456 1478 IPR013087 -
Mal2g2477 1572 SMART c2h2final6 1509 1533 IPR013087 -
Mal2g2477 1572 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 6 1042 - -
Mal2g2477 1572 MobiDBLite consensus disorder prediction 1225 1251 - -
Mal2g2477 1572 MobiDBLite consensus disorder prediction 1266 1448 - -
Mal2g2477 1572 MobiDBLite consensus disorder prediction 1402 1438 - -
Mal2g2477 1572 SMART cupin_9 169 338 IPR003347 -
Mal2g2477 1572 MobiDBLite consensus disorder prediction 497 521 - -
Mal2g2477 1572 ProSitePatterns Zinc finger C2H2 type domain signature. 1511 1533 IPR013087 -
Mal2g2477 1572 SMART JmjN_1 17 58 IPR003349 -
Mal2g2477 1572 MobiDBLite consensus disorder prediction 1351 1392 - -
Mal2g2477 1572 SUPERFAMILY beta-beta-alpha zinc fingers 1527 1561 IPR036236 -
Mal2g2477 1572 SUPERFAMILY beta-beta-alpha zinc fingers 1495 1537 IPR036236 -
Mal2g2477 1572 MobiDBLite consensus disorder prediction 633 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2477 Mal-Chr2 31300726 31310221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2477 760 861 C2H2 Transcription Factor Family AT5G04240 32.353 2.07e-14 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal2g2477 JmjC 2.6e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2477 - - mtr:MTR_3g075210 2796.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g2477 2 31300726 31310221 Mal2g2477 2 31300726 31310221 ECH
Mal2g2477 2 31300726 31310221 Mal5g4023 5 109949757 109956736 PCT