Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2467 ATGACAAGCACACCTTTCTCTTTGGCTTTATTGTTCTTCTCTCTTTTCATGCCTACCCTCATTTCCTCTTCACCTTTTCAAAACCCTGAATTGGTAGTCCAAGAGGTAAACAGGAAAATCAATGCCTCTGCAGCTAGGAGGAATTTAGGGTACCTGTCCTGTGGGAGTGGAAACCCAATTGATGATTGTTGGAGGTGTGACTCAAATTGGGAGAAGAACAGGCAAAGACTAGCAGATTGTGCAATTGGGTTCGGCAAGAACGCCATTGGTGGAAGAAACGGTAAAATTTATGTTGTAAATGATGCGGGTGATGACAATCCGGTGACCCCAAAGCCGGGAACACTCCGCCACGCCGTGATCCAAGAGGAACCATTATGGATAATCTTTGATAGAGACATGGTGATCAAATTAAAAGAAGAGTTAATCATGAATTCTTTCAAAACAATTGATGGTAGAGGTGCTAGTGTGCACATTGCTGGTGGTCCATGCATTACTATACAATATGTCACAAATATTATTATCCATGGGATACATATACATGATTGTAAACAAGGTGGAAATGCTATGGTGAGGGACTCCCCACGGCATTTCGGGTGGAGGACTATATCGGACGGTGATGGTGTGTCGATTTTTGGTGGAAGTCATGTTTGGGTTGATCATTGTTCTTTGTCTAATTGTGAGGATGGTTTGATTGATGCTATTCATGGTTCTACTGCTATAACAATCTCTAACAATTACATGACACACCATGATAAAGTCATGTTGTTAGGTCATAGTGACTCTTACACTCAAGATAAGAACATGCAAGTCACTATAGCTTTTAACCACTTTGGTGAAGGTCTTGTTCAAAGGATGCCAAGATGTAGACTTGGATATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCTATTGGAGGAAGTGCTAATCCAACCATTAACAGCCAAGGAAACAGATTTGTTGCACCAAATAATAGATTCAGCAAAGAGGTGACAAAGTATGAAGATGCAGCAGAAAGTCAATGGAAGCATTGGAACTGGAGATCAGAAGGGGACTTAATGGTAAATGGTGCATTTTTCACTTCATCAGGTGGTGGAGCCTCATCTAGTTATGCAAGAGCTTCAAGCTTAAGTGCAAGACCATCTTCTATTGTTGGTTCCATTACAATAGCAGCTGGAACACTTAATTGTAAGAAAGGGAATCCTTGCTAG 1221 0.412 MTSTPFSLALLFFSLFMPTLISSSPFQNPELVVQEVNRKINASAARRNLGYLSCGSGNPIDDCWRCDSNWEKNRQRLADCAIGFGKNAIGGRNGKIYVVNDAGDDNPVTPKPGTLRHAVIQEEPLWIIFDRDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNAMVRDSPRHFGWRTISDGDGVSIFGGSHVWVDHCSLSNCEDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNNRFSKEVTKYEDAAESQWKHWNWRSEGDLMVNGAFFTSSGGGASSSYARASSLSARPSSIVGSITIAAGTLNCKKGNPC* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2467 406 SMART amb_all 132 329 IPR002022 -
Mal2g2467 406 PANTHER PECTATE LYASE 9 403 - -
Mal2g2467 406 SUPERFAMILY Pectin lyase-like 35 381 IPR011050 -
Mal2g2467 406 PANTHER PECTATE LYASE 18-RELATED 9 403 IPR045032 GO:0030570
Mal2g2467 406 Gene3D - 57 399 IPR012334 -
Mal2g2467 406 Pfam Pectate lyase 139 323 IPR002022 -
Mal2g2467 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Mal2g2467 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Mal2g2467 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Mal2g2467 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Mal2g2467 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Mal2g2467 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Mal2g2467 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Mal2g2467 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2467 Mal-Chr2 31158754 31161061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2467 1 406 Polysaccharide Lyase AT5G63180 78.240 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2467 K01728 - gmx:100779940 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4028 5 110042463 110044244 Mal2g2467 2 31158754 31161061 ECH
Mal1g0293 1 3236383 3244587 Mal2g2467 2 31158754 31161061 ECH
Mal2g2467 2 31158754 31161061 Mal2g2467 2 31158754 31161061 ECH