Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2450 ATGTCTATCACTTCCACCACCCCCCTCTTCAAGTCCCTAACCATGGCCAAAACCTGCCTCCTCTCATTCCCCTCTTCCCTCTTCCACTCCAAAACCAAACCCACCTTCTTCTCCCTTCCCTCCAAACCCCTCAATCGCCATCTCTCCCTCTCCAAAACAAACCGCTCTATCTCTCCCTTGTTCGTTGCTCAAGAAGGCGACACGCTCACCACTGAAACCGAAGAAGCCGAACTGAGTCTCGATTGGGAGCCCAGCGCCGACGCCGCTGAAACTGAAACCGGTGGTGATGATTCTGCTGAAGATGATTTTGTTGAACCGCCTAAAGTTGCGAAATTATTTGTTGGTAATTTGCCTTTTAATGTTGATGGTGAGAAATTGGCTATGCTTTTCGAACAAGCCGGAACCGTTGAGATTGCTGAGGTTATTTATTTCAGGGATACTGACCGGAGTCGTGGATTTGGATTTGTAACTATGAGTACGGTTGAAGAAACTGAGGCTGCTGTAGAGAAGTTTAACGGCTATGATTATGATGGAAGATCGTTGGTTGTTAACAAGGCTTCTCCAAAAGGAACTCGGCCTGAGCGTACTGAGCGTGCACCTCACTCTTTTGAACCTGTCATAAAAGTTTATGTTGGTAACTTGGCCTGGGGAGTTGATGATAGTAAGCTTGAGCAAGTTTTCAGTGAACATGGTAAGGTTGTGAGTGCTCAAGTAGTCTATGATAGAGAGACCGGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAAAAGGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTTTGGAGGGTAGGACAATAAGAGTGAATGTTGCCGAAGACAGGCCCAGGCGTGGCTCCTTTTGA 879 0.471 MSITSTTPLFKSLTMAKTCLLSFPSSLFHSKTKPTFFSLPSKPLNRHLSLSKTNRSISPLFVAQEGDTLTTETEEAELSLDWEPSADAAETETGGDDSAEDDFVEPPKVAKLFVGNLPFNVDGEKLAMLFEQAGTVEIAEVIYFRDTDRSRGFGFVTMSTVEETEAAVEKFNGYDYDGRSLVVNKASPKGTRPERTERAPHSFEPVIKVYVGNLAWGVDDSKLEQVFSEHGKVVSAQVVYDRETGRSRGFGFVTMSDEKEMNDAIAALDGQSLEGRTIRVNVAEDRPRRGSF* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2450 292 CDD RRM_HP0827_like 111 188 - -
Mal2g2450 292 PANTHER RIBONUCLEOPROTEIN 3 78 - -
Mal2g2450 292 PANTHER OS02G0815200 PROTEIN 3 78 - -
Mal2g2450 292 SUPERFAMILY RNA-binding domain, RBD 106 198 IPR035979 GO:0003676
Mal2g2450 292 PANTHER RIBONUCLEOPROTEIN 94 292 - -
Mal2g2450 292 Gene3D - 198 292 IPR012677 -
Mal2g2450 292 MobiDBLite consensus disorder prediction 66 101 - -
Mal2g2450 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 181 IPR000504 GO:0003723
Mal2g2450 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 279 IPR000504 GO:0003723
Mal2g2450 292 SUPERFAMILY RNA-binding domain, RBD 202 290 IPR035979 GO:0003676
Mal2g2450 292 CDD RRM_HP0827_like 208 284 - -
Mal2g2450 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Mal2g2450 292 SMART rrm1_1 208 281 IPR000504 GO:0003723
Mal2g2450 292 SMART rrm1_1 111 184 IPR000504 GO:0003723
Mal2g2450 292 Gene3D - 63 197 IPR012677 -
Mal2g2450 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 285 IPR000504 GO:0003723
Mal2g2450 292 PANTHER OS02G0815200 PROTEIN 94 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2450 Mal-Chr2 30859497 30861607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2450 112 289 Eukaryotic Initiation Factors Gene Family AT3G16380 36.649 1.49e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2450 - - gmx:100810381 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4036 5 110180916 110183140 Mal2g2450 2 30859497 30861607 ECH
Mal2g2450 2 30859497 30861607 Mal2g2450 2 30859497 30861607 ECH
Mal5g4036 5 110180916 110183140 Mal2g2450 2 30859497 30861607 PCT