Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2418 ATGGGTCGCCATTCATGTTCTTTAAAGCAAAAACTAAGAAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTTTTCAATTACATAACCATGTTTGGTGTTGGATGTTGGAGTTCTGTTCCTAAAAAAGCTGGGTTGCAAAGGTGTGGAAAGAGTTGTAGATTGAGATGGATAAACTATTTAAGACCTGATTTGAAGAGAGGAATGTTCTCACAGCAAGAGGAAGATCTTATTATTAGTCTTCATGAAGTACTTGGAAATAGGTGGGCTCAAATTGCAGCACAATTACCAGGGAGAACAGATAATGAGATAAAGAACTTTTGGAATTCAAGTTTGAAGAAGAAACTAATGAAACAAGGGATTGATCCAGCTACACATAAGCCCTTCATCAATAATGAATTATCTCTTATAAAGGAAGAGAAGGAAAAAGCATCAATGCTAGTAATGCCACTGTTTCAATCTCAAAGGACTTTAGCTTCACACACAATGCTAGAATCCTCACAGGAATATTCAGAAGCACTTCTAATGAGTGATTTGATTAATCACTATAATATTGGTGGATTATCTTTAACAGAAGCTTCAAGAAAATGTTTCATGAATAAGTCAGCATTGGATCCATTGTGCTATAATTCAAGTATGATCAATTATTATCAGCCAAGTCTATTGCAATTTGAACAGAACCAGTTTGAAACCAATTCAAACTATTTCTTCTCTTCAATGCCTTGTTTAAATAGTCAAGAGTTTTCAGAAAACAATAACTCAGTTTCCAAGTTTAGTTCTCTTTTGGTGAATGAAAGTTCAAGCTGCAATAGTACTTCAACCATGAGTGACTATTATGGAGGTGGATTAATCTCATGGGAAGGTGAGAATAGTAAATTGTTGGATCCTTTGTTGGAGTTTGAAGTGAATGCAGTAAAATGTGAAGAGTTCATCAACAAGACAAGTTCATGGCAAGAAGGACAGTTTCTGACTCATAATAATCCAATAAATTTCAATACCTATCCTTTAACATCACTGTCAGAAGATCTAAGTAATATTGAAGCTAATTTTGATGTATTGCACCATTTATGA 1071 0.3455 MGRHSCSLKQKLRKGLWSPEEDEKLFNYITMFGVGCWSSVPKKAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSSLKKKLMKQGIDPATHKPFINNELSLIKEEKEKASMLVMPLFQSQRTLASHTMLESSQEYSEALLMSDLINHYNIGGLSLTEASRKCFMNKSALDPLCYNSSMINYYQPSLLQFEQNQFETNSNYFFSSMPCLNSQEFSENNNSVSKFSSLLVNESSSCNSTSTMSDYYGGGLISWEGENSKLLDPLLEFEVNAVKCEEFINKTSSWQEGQFLTHNNPINFNTYPLTSLSEDLSNIEANFDVLHHL* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2418 356 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal2g2418 356 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Mal2g2418 356 Gene3D - 68 144 - -
Mal2g2418 356 PANTHER MYB DOMAIN PROTEIN 55 1 349 - -
Mal2g2418 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mal2g2418 356 CDD SANT 70 112 IPR001005 -
Mal2g2418 356 CDD SANT 17 61 IPR001005 -
Mal2g2418 356 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal2g2418 356 SMART sant 66 114 IPR001005 -
Mal2g2418 356 SMART sant 13 63 IPR001005 -
Mal2g2418 356 Gene3D - 11 67 - -
Mal2g2418 356 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Mal2g2418 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Mal2g2418 356 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal2g2418 356 PANTHER MYB TRANSCRIPTION FACTOR 1 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2418 Mal-Chr2 30330391 30331872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2418 1 157 MYB Transcription Factor Family AT4G01680 72.611 2.71e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal2g2418 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2418 K09422 - gmx:100811140 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g2418 2 30330391 30331872 Mal2g2418 2 30330391 30331872 ECH
Mal5g4071 5 110970784 110972184 Mal2g2418 2 30330391 30331872 PCT