Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2417 ATGGCTAGAAGTAAGGTGAAACTTGCATACATAATCAATAACTCGAAGAGGAGGGCCGCATTCAGAAAAAGGAAAAATGGTATATTAAAGAAGATTAGCGAACTCAACACCCTTTGTGGAGTAGATGCATGTGCAATAATATATGATGAGAACTATCCTCGAGCAGAGGTTTGGCCATCTGAAGCGGGAGTAAGAAGTGTGTTGTCTAGGTTTACGAGTTATTCTGAACTCGAGCGACGCAAAAAAATGGTGGATATGGAGACCTTCTTGATGCAAAACATTGAGAAAGCCCAAAAGTTGTTCAAAAAACAAAGGGAAGAAAACAATAAGAAGGAAATAGAAAATTTTATCAATCAAATTATTCATACTGGTGAATATAATATGGATAATATGAGCTTGACTGATCTCAATGATTTGACAACTTTTATTGATAAGAAGCTGAAAGAAGTCGACCAGAGGATGAATTTGATGGAAGTCCAAGCCAAAGAAGAGCTTGCAAATGGAGCTGAAGCTGTGAATGTAGGAGATATGCTAGATAGTATGGGTATTGCTCAAGGGTTGGTGAGGAGAGGCTTAGAAGTCAACATGAATTATGGTTTTCAAAGTGATCAACTGCCTTTGGACTTTTCCAAGAATCCATCTTCTGAGGTTAATGTCGACCCAAATGGCTTTAGATCTATCTAG 684 0.3801 MARSKVKLAYIINNSKRRAAFRKRKNGILKKISELNTLCGVDACAIIYDENYPRAEVWPSEAGVRSVLSRFTSYSELERRKKMVDMETFLMQNIEKAQKLFKKQREENNKKEIENFINQIIHTGEYNMDNMSLTDLNDLTTFIDKKLKEVDQRMNLMEVQAKEELANGAEAVNVGDMLDSMGIAQGLVRRGLEVNMNYGFQSDQLPLDFSKNPSSEVNVDPNGFRSI* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2417 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal2g2417 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal2g2417 227 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 163 - -
Mal2g2417 227 Coils Coil 94 114 - -
Mal2g2417 227 PANTHER MADS BOX PROTEIN 3 163 - -
Mal2g2417 227 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Mal2g2417 227 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal2g2417 227 Coils Coil 147 167 - -
Mal2g2417 227 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Mal2g2417 227 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Mal2g2417 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal2g2417 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2417 Mal-Chr2 30322715 30324313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2417 1 157 Type I MADS-box Gene Family AT5G48670 45.223 9.21e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g2417 SRF-TF 1.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2417 - - cam:101511888 230.335