LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal2g2359	ATGGGATCATACATTAATTTGGTAGACTTGGTGTCCACGGATAATATCAATTTCTATCGAACTCCTCCGCGAGCTATGACTGTTCCACGAGTTACATTGACTGATGTAGATGGTCAACAGAGCAATGATAATGATTCAAATGCTTTCTCGTCAGAAGATATACATCGCAGGATGATAATAGTAGCAAATTTTCTTCCTCTGAATGCTAAAAAGGATGACCTTTCTGGTAGATGGTGCTTTAGTTACGATGAAGGTTCGATTTTTAGGCAGTTAAAGGATGGTCTCTCTTCTGATATTGATGTTGTTTACGTGGGATCTCTGAAGGTTGATGTTGATGAAAGTGAGCAAGAGAATGTTTCCCAGTTGTTGGAGGAATTCAATTGCTTCCCTACTTTTATTCCTTCAGAAATCCAGGAAAACTTTTATGGTGGTTTCTGCAAGAACTATTTGTGGCCTCTATTCCATTACATGCTGCCTCAATTCCCTCGCTTCGATAGGACACTTTGGCAGGCTTATGTTTCTGCTAACAAGATATTTGCTTATAAAGTCATGGAAGTCCTTAATTCAACAAAAGATTATGTATGGATTCACGATTATCATCTTATGGTTCTTCCAACATTTTTGCGGAGGTGGTTTACTCATATAAGGCTAGGCTTTTTTCTCCACAGTCCGTTTCCTTCCTCCGAAGTTTTTAAAACTATACCTGTAAGAACTGAAATTTTGAAAACACTGCTTAATGTGGATATGATTGGCTTTCAAACATTTGATTACACCAGCCATTTTTTGTCCGCCTGCAGTCGAATTCTGGGCCTGGAATATGAATCCAAAAGGGGTCACATTTTGATTGAATATTTTGGACGTACGATATTAATTAAAACATTGCCAGCTGGGATTCATATCGGTCGCATTCAATCCGCTTTAAATCACCCTTCCGCTTCAGTTAAAGTTAGAGAAGTCTACAAACAACTTAAGGGGCTACGACTTATTGTGGGTATTGACGACAGCGACATGTTCAATGGCGTGAGCTTGAAGTTCCTTGCCTTTGAACAACTCTTGAAACAATTCCCTGAACTACAGGGTCAGTTGGTATTAGTCCAAATTTTAAATCCTCCAAGGAGCGATGGTAGATATGTTGAGGAAGTGAAGAAGATGGCATATACGATTGCCAAACGAATAAACGAAAGGTTTGGTTTTCTAGATTATAAACCTGTCGTCATCATTGATCGTTATGTTCCTTTCCATGAGAAGACAGCGTATTATGCGTTGGCAGACTGTTGTATCGTGAATGCGGTGCAGGACGGTATGAATTTGGTTCCGTACAAATACATAGTTTGCAGGCAGGGGAGTTCTAAAATGGACGAAGTGTTAGATATTGCTTCCAACTCCCCTCGCATAAGTTCAATTGTTGTTTCTGAGTTTGTGGGTTGCCTGTCATCTCTTAGTGGGTCAATCAGGGTGGATCCGTGGAATATAAATGCTGTTGCTGAAGCGTTGAAGTTGGCTATCACAATGTCCAATGAAGAGAAACAACGTCGGCATGAGAAGAACTACCAATACATTAGTTCTCATGATGTGACTTACTGGGCCCAACATTTTGAGCAAGACCTAGTTTTCTCGTGTAAGGATCATGATAGGAAACTTTGCTGGGGTATTGGCTTTGGCCTGGAATTTAGAGTTTTGTCCCTCTCTCCTAATTTCAGGAAGCTGTCCAGAAACTACGTTGTTTCTGCATATAAAAGGACAAAATGCAGGGCAATCTTTTTAGATTATGATGGTACAATTGTACCTAAGGATTCCATTATTCCATTCCCCGGTCCTGGAGTCATATCTGTGCTAAACAATCTCTGCAGTGACCTTAACAACACTGTGTTTATTGTCAGTGGTCGTGATAGATCTACATTGAGCGCATTGTTTTATGAGTGTGAGAATCTTGGTATGGCAGCTGAGCATGGTTGTTATATATGTTGGGGCGAAGAATCAGATTGGAAAGCGAATCATGTCGGCACAAATTTTGCATGGAAAAGCATCACTGAACGTGAGATGCGGTCATATACTGATAAAACAGATGGATCCTATATAGAGTATAAAGACAGTGCATTGGTATGGAATTACCATGATGCTTCAGCATATTTTGGATCACAGCAAGTCAATGAGATGCTTTACGATCTACGAAGTGTGCTTGCCAATGAGCCTGTTGTTGTTAAAAAGGGGAAGCATATTGTTGAGGTCAAGGTTGAGGGGATTAACAAAGGGTTAGCTGTAGACGAAGTTCTGTCATTACTAACAATGAGCGGCAAATCGCCAGATTTTGTTCTTTGCAGTGGGGATGATAGATCTGATGAGGACATGTTTGAGAGCATATTAAACAAATCCTATGCTTCAACCTCATCTTCATCGCCAGAAATTTTTACATGTACTGTTGGGCAGAAACCAAGCAAAGCTAATTACTACTTGGATGATAGTGTGGAAGTTATGATGTTACTTGAGGATCTTGGTGCTGCTTCTGCAGAGTCCAGAACAACAACATAG	2529	0.4025	MGSYINLVDLVSTDNINFYRTPPRAMTVPRVTLTDVDGQQSNDNDSNAFSSEDIHRRMIIVANFLPLNAKKDDLSGRWCFSYDEGSIFRQLKDGLSSDIDVVYVGSLKVDVDESEQENVSQLLEEFNCFPTFIPSEIQENFYGGFCKNYLWPLFHYMLPQFPRFDRTLWQAYVSANKIFAYKVMEVLNSTKDYVWIHDYHLMVLPTFLRRWFTHIRLGFFLHSPFPSSEVFKTIPVRTEILKTLLNVDMIGFQTFDYTSHFLSACSRILGLEYESKRGHILIEYFGRTILIKTLPAGIHIGRIQSALNHPSASVKVREVYKQLKGLRLIVGIDDSDMFNGVSLKFLAFEQLLKQFPELQGQLVLVQILNPPRSDGRYVEEVKKMAYTIAKRINERFGFLDYKPVVIIDRYVPFHEKTAYYALADCCIVNAVQDGMNLVPYKYIVCRQGSSKMDEVLDIASNSPRISSIVVSEFVGCLSSLSGSIRVDPWNINAVAEALKLAITMSNEEKQRRHEKNYQYISSHDVTYWAQHFEQDLVFSCKDHDRKLCWGIGFGLEFRVLSLSPNFRKLSRNYVVSAYKRTKCRAIFLDYDGTIVPKDSIIPFPGPGVISVLNNLCSDLNNTVFIVSGRDRSTLSALFYECENLGMAAEHGCYICWGEESDWKANHVGTNFAWKSITEREMRSYTDKTDGSYIEYKDSALVWNYHDASAYFGSQQVNEMLYDLRSVLANEPVVVKKGKHIVEVKVEGINKGLAVDEVLSLLTMSGKSPDFVLCSGDDRSDEDMFESILNKSYASTSSSSPEIFTCTVGQKPSKANYYLDDSVEVMMLLEDLGAASAESRTTT*	843

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal2g2359	842	Pfam	Trehalose-phosphatase	587	821	IPR003337	GO:0003824\|GO:0005992
	Mal2g2359	842	Gene3D	-	712	842	IPR023214	-
	Mal2g2359	842	Gene3D	-	583	702	IPR023214	-
	Mal2g2359	842	PANTHER	ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED	3	838	-	-
	Mal2g2359	842	TIGRFAM	T6PP: trehalose-phosphatase	583	829	IPR003337	GO:0003824\|GO:0005992
	Mal2g2359	842	Pfam	Glycosyltransferase family 20	57	536	IPR001830	GO:0003824\|GO:0005992
	Mal2g2359	842	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	57	536	-	-
	Mal2g2359	842	CDD	HAD_TPP	585	826	-	-
	Mal2g2359	842	Gene3D	Glycogen Phosphorylase B;	305	521	-	-
	Mal2g2359	842	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	585	786	IPR006379	-
	Mal2g2359	842	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	3	838	IPR001830	GO:0003824\|GO:0005992
	Mal2g2359	842	SUPERFAMILY	HAD-like	584	832	IPR036412	-
	Mal2g2359	842	Gene3D	Glycogen Phosphorylase B;	48	304	-	-
	Mal2g2359	842	CDD	GT20_TPS	57	536	IPR001830	GO:0003824\|GO:0005992

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal2g2359	Mal-Chr2	29437264	29440755	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal2g2359	3	839	Trehalose Biosynthesis Gene Families	AT1G23870	59.053	0.0	1044

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal2g2359	K16055		-	gmx:100812031	1176.77