Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2342 ATGACTATCAAAGCTCCTACATTATTTTCAATGGTTCTGGACTCCACACTACTACTATTACTACTACTTCTGCTCCTTGTCGGAGCCTTCGTGGTAGTAACATGTTACCGCCTTATCCAAAGGTTCCTCACTCCCATCTCGTTGGACGATGTGGAGTCTCAGTCCACAATGACGGAGGCCCCACACGTACACGCCTATGGCTTAGAAAAGAGTGTTATAAACGCTATTCCCTCGTTCATCTACAATACCACTAAATCTAAACAAGATGAATCTAATCATGAATGCACCATTTGCTTGGTTGAATTTGAAAATAGTGATTACATCCGCACCCTCCCTCTTTGTTCCCACACTTTCCATCTCGTTTGCATTGACGTTTGGCTTCGTAAACAACCTAATTGTCCTCTTTGTCGTTCCTGTCTTCGTTGTTATCAGTTTGATCAGTCTCCTTTAAAACCTATCATGGCAGATAAAATCCACCCCTCCTTCCATGATCACATGCCTTTCCAAATCTCTCATTCTCACTCTGTAATTCGATCAGTGATGGAAATCACTTCCCGCTCCAACAATGATGAGCTCGTCGTTGGAGAATGCGGGCTCCCATAG 603 0.4362 MTIKAPTLFSMVLDSTLLLLLLLLLLVGAFVVVTCYRLIQRFLTPISLDDVESQSTMTEAPHVHAYGLEKSVINAIPSFIYNTTKSKQDESNHECTICLVEFENSDYIRTLPLCSHTFHLVCIDVWLRKQPNCPLCRSCLRCYQFDQSPLKPIMADKIHPSFHDHMPFQISHSHSVIRSVMEITSRSNNDELVVGECGLP* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2342 200 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 58 171 IPR044675 -
Mal2g2342 200 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Mal2g2342 200 SUPERFAMILY RING/U-box 76 143 - -
Mal2g2342 200 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 58 171 - -
Mal2g2342 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 142 IPR013083 -
Mal2g2342 200 Pfam Ring finger domain 94 137 IPR001841 -
Mal2g2342 200 SMART ring_2 95 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2342 Mal-Chr2 29123830 29124432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2342 19 194 C3H Transcription Factor Family AT3G18930 35.780 1.32e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2342 - K19041 mtr:MTR_3g078450 314.694