Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2308 ATGGCGCATAGATTGTTGAGGGACCACGAAGCCGACGGTTGGGAGCGTTCTGACTTCCCCATCATCTGCGAATCTTGCCTCGGTGATAGCCCTTACGTTCGAATGACACGGGCTGAGTATGACAAAGAGTGCAAGATTTGTACAAGGCCATTCACTGTTTTTAGATGGAGACCTGGTCGGGATGCAAGGTATAAGAAATCCGAGATCTGCCAGACATGTAGTAAACTGAAAAATGTTTGTCAAGTATGCCTTCTGGATCTTGAATATGGGCTCCCAGTCCAAGTCCGCGACACAGCTCTCAGTATCAGTTCCCATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTTTTTTGCTGAAGAACATGACCGTAAGGCTAGAGCTGGTATAGATTATGAATCCTCTTTTGGTAAAGCACGCCCAAATGACACTATCTTGAAGCTTCAAAGGACAACACCTTATTACAAAAGAAACCGGGCACATATTTGTAGTTTCTTCATAAGGGGTGAGTGTACTAGAGGAGCTGAGTGCCCTTACAGACATGAGATGCCAGTAACTGGGGAACTGTCTCAACAAAATATCAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCTATGAAGCTACTCGGCAAGGCAGGGGAGATGAACTCTCTGGAGGTTCCCGAGGATGAGAGCATTAAAACACTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGAGATAACTTCTATGCCCATGGAGAAATTGAATCAGTCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACCTATACAACCAGAGAAGGTGCAGAAAAGGCAGCTGAAGAACTCTCAAACAAACTGGTTATTAAGGGCCTTAGGCTAAAGCTGATGTGGGGAAGGCCTCAGTCAGCAAAACCTGAGTCTGACGGCTCTGATCAAGCAAGGCAGCAGGCTTCTGTGGCTCATAGTGGGTTGTTGCCTCGAGCAGTTATATCACAGCAGCAGAACCAGGACCAAACCCAAGGAATGCTTTACTATAACAATCCACCTCCTCCTCAGCAGGAAAGGAACTATTACCCTTCAATGGATCCCCAAAGAATGGGTGCTCTTCTTCCATCTCAAGACGGTCCTCCTGGTGGGCCTTCTGGATCAGGGGAGAACAAACATAGTTCCGAGAAGCAGCAAATGCAACATTATGGCCATCCTATGATGCCACCTCCACATGGCCAGTATCATCATCAGTACTATCCTCCATATGGTTACATGCCACCAGTTCCCCCTTATCAACGGTACCCACCACAATACAATTCTGCAATGCCTCCACCCCAACCACCTGCTGCAAACCATCCACCCCATCCACCTGCTGCAAATCATCCCTATCAACATGCTATGCAACCAGGGTCTTCACAGCCAGGATCTGGACAAGCTGGGTCTGCACCAGCCGAAACTGGAACATCGACATCAGGGTCACAGCAGCAGTGA 1482 0.4757 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSHDAIPKSDVNREFFAEEHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHICSFFIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMNSLEVPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQSAKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMLYYNNPPPPQQERNYYPSMDPQRMGALLPSQDGPPGGPSGSGENKHSSEKQQMQHYGHPMMPPPHGQYHHQYYPPYGYMPPVPPYQRYPPQYNSAMPPPQPPAANHPPHPPAANHPYQHAMQPGSSQPGSGQAGSAPAETGTSTSGSQQQ* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2308 493 MobiDBLite consensus disorder prediction 306 320 - -
Mal2g2308 493 Gene3D - 149 212 - -
Mal2g2308 493 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Mal2g2308 493 MobiDBLite consensus disorder prediction 462 493 - -
Mal2g2308 493 Gene3D - 213 310 IPR012677 -
Mal2g2308 493 Pfam Torus domain 151 194 IPR032297 -
Mal2g2308 493 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Mal2g2308 493 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 452 - -
Mal2g2308 493 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Mal2g2308 493 SMART rrm1_1 229 297 IPR000504 GO:0003723
Mal2g2308 493 MobiDBLite consensus disorder prediction 301 321 - -
Mal2g2308 493 MobiDBLite consensus disorder prediction 432 457 - -
Mal2g2308 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Mal2g2308 493 MobiDBLite consensus disorder prediction 334 411 - -
Mal2g2308 493 MobiDBLite consensus disorder prediction 334 352 - -
Mal2g2308 493 MobiDBLite consensus disorder prediction 432 493 - -
Mal2g2308 493 CDD RRM_RBM22 227 300 - -
Mal2g2308 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Mal2g2308 493 SUPERFAMILY RNA-binding domain, RBD 213 303 IPR035979 GO:0003676
Mal2g2308 493 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 452 IPR039171 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2308 Mal-Chr2 28686582 28691245 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2308 229 469 Eukaryotic Initiation Factors Gene Family AT2G23350 29.588 1.19e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2308 K12872 - gmx:100810440 798.89