Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2307 ATGCAGACAAAGGCTGATTATGGAAAAGAGTGCAAGATTTGTACAAGGCCATTTACTGTTTTTAGATGGAAACCTGATCGAGATGCAAAACATAAGAAATGTGAGATCTGCCAGACATGTAGTAAACTTAAAAATGTTTGTCAGGTATGCCTTCTGGATCTTGAATATGGACTTCCAGTTCAAGTTCGCGACACAGCTCTAAATATCAGTTCCAATGATGTCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCACGACCACAAGGCTAGAGCTGGTATAGATTATGAATCCTCTTTTGGTAAAGCACGCCCAAATGACACTATCTGGAAGCTTCAAAGGACAACACCCTATTACGAAAGAAACCGGCCACATATTTGCAGTTTCTTCGCAAGGGGTAAGTGTACTAGAGGAGCTGAGTGCCCTTATAGACATGAGATGCCAGTAACTGGGGAACTGTCTCAACAAAATATCAAAGATCGTTATCATGGGAGACAGCCATTAGACAAAGAACATGTATCAAACGTATTGTGA 543 0.4052 MQTKADYGKECKICTRPFTVFRWKPDRDAKHKKCEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALNISSNDVIPKSDVNREYFAEEHDHKARAGIDYESSFGKARPNDTIWKLQRTTPYYERNRPHICSFFARGKCTRGAECPYRHEMPVTGELSQQNIKDRYHGRQPLDKEHVSNVL* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2307 180 Pfam Torus domain 124 161 IPR032297 -
Mal2g2307 180 ProSiteProfiles Zinc finger C3H1-type profile. 124 151 IPR000571 GO:0046872
Mal2g2307 180 SUPERFAMILY CCCH zinc finger 127 149 IPR036855 GO:0046872
Mal2g2307 180 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Mal2g2307 180 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 3 167 IPR039171 GO:0003723
Mal2g2307 180 Gene3D - 115 175 - -
Mal2g2307 180 PANTHER U2 AUXILIARY FACTOR SMALL SUBUNIT-RELATED 3 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2307 Mal-Chr2 28682391 28684013 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal2g2307 Torus 7.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2307 K12872 - sspl:121792344 318.931