Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2211 ATGTTAAAGAAAAAGTCTAGTTTGGGTCGTCAAAAAATTCCTATTGAGAAAATACCTAAAAAAAGTCATTTACAAGTTACATTTTCTAAGCGTCGTTCCGGACTTTTCAAGAAGGCTAGTGAGCTTTGCACTCTTTGTGGGGTGGAAATTGCAATTGTGGTTTTCTCTCCGGCCAATAAGGCATTTTCTTTTGGCCATCCAGAAGTTGAGTCTATCATTGATCGTTATTTGAGTCGAAACCCTCCACAAGAGTCCAATTCTCACCAACTTGTCGAGGTTCAAAGAAATGCTAATGTCCGCGATCTCAACTTGCAACTAACTCAACTTCTTAGCCATCTTGAGATTGAGAAGAAGCAAGGGGAAGAGATAGATCAAGTGAGGAAAGCTAGGCAAAGTCAAATTTGGTGGGAAAGCCCTATTGATGAACTTGGCTTGAATGAATTGCTTCAATTAAAGGTGTCTATTGAGGACCTCAAGAAGAATCTTGGAAAAATTGCTACCAAATGCATGATGGAACAATCAAATGTATCTTCATCAAATATTGGAGCTAATGGATTTTTAGGTATAGGGATTAATATTGCTTCCACACTTCCTAATGGATACTATCTTGGTTTTCGACATGGACATCTTTGA 633 0.3823 MLKKKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPANKAFSFGHPEVESIIDRYLSRNPPQESNSHQLVEVQRNANVRDLNLQLTQLLSHLEIEKKQGEEIDQVRKARQSQIWWESPIDELGLNELLQLKVSIEDLKKNLGKIATKCMMEQSNVSSSNIGANGFLGIGINIASTLPNGYYLGFRHGHL* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2211 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Mal2g2211 210 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Mal2g2211 210 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Mal2g2211 210 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 177 - -
Mal2g2211 210 PANTHER MADS BOX PROTEIN 7 177 - -
Mal2g2211 210 Gene3D - 89 183 - -
Mal2g2211 210 SUPERFAMILY SRF-like 9 87 IPR036879 GO:0003677|GO:0046983
Mal2g2211 210 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Mal2g2211 210 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Mal2g2211 210 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Mal2g2211 210 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Mal2g2211 210 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2211 Mal-Chr2 27275233 27275865 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2211 5 189 Type I MADS-box Gene Family AT5G60440 52.356 2.58e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g2211 SRF-TF 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2211 - - gmx:100781526 307.375