Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2187 ATGGCTGACAACATGAGATCCACGAGACAAAAGACTGCTTTAAATGCTAAGGGTTTAGGAACTTCATCTACAGGCAAGGGAATAACTGGTGGCAAGGCATCACTGCATCATTGTAATTACTGCAAGAAAGACATTTCAGAGAAAGTTCACATCAAATGCGCCGAGTGTCAAGATTTTGATCTATGCATCGAGTGCTTCACTATTGGTGCCGAGGTGACACCTCATAAAAGTAATCATTCATATCGGGTTATGGAAAATCTCTCTTTTCCGCTTACATGTCCAGATTGGGATGTGCGTGAAGAGAATTTACTTCTTGATGGCCTTGAAATGTATGGATTTGGAAATTGGAAAGGTGTTGCTGAAAAAGTTGGTACGAAAAGCGAATCTGAGTGTATTGACCACTATAAAACTGTATATCTGAATTCGCCAGGGAAAGAGCATAGAGGAACTCTGTGCCATGAGAAAGGAACATAA 474 0.4072 MADNMRSTRQKTALNAKGLGTSSTGKGITGGKASLHHCNYCKKDISEKVHIKCAECQDFDLCIECFTIGAEVTPHKSNHSYRVMENLSFPLTCPDWDVREENLLLDGLEMYGFGNWKGVAEKVGTKSESECIDHYKTVYLNSPGKEHRGTLCHEKGT* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2187 157 Pfam Myb-like DNA-binding domain 96 137 IPR001005 -
Mal2g2187 157 SMART sant 92 141 IPR001005 -
Mal2g2187 157 Pfam Zinc finger, ZZ type 37 76 IPR000433 GO:0008270
Mal2g2187 157 CDD ZZ_ADA2 37 84 IPR041983 -
Mal2g2187 157 SMART zz_5 32 77 IPR000433 GO:0008270
Mal2g2187 157 Gene3D - 31 86 IPR043145 -
Mal2g2187 157 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 143 IPR017930 -
Mal2g2187 157 SUPERFAMILY Homeodomain-like 89 143 IPR009057 -
Mal2g2187 157 ProSitePatterns Zinc finger ZZ-type signature. 38 65 IPR000433 GO:0008270
Mal2g2187 157 ProSiteProfiles Zinc finger ZZ-type profile. 33 89 IPR000433 GO:0008270
Mal2g2187 157 SUPERFAMILY RING/U-box 36 96 - -
Mal2g2187 157 ProSiteProfiles Myb-like domain profile. 96 139 IPR001005 -
Mal2g2187 157 Gene3D - 94 143 - -
Mal2g2187 157 CDD SANT 96 138 IPR001005 -
Mal2g2187 157 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 5 147 IPR034318 GO:0003713|GO:0006357|GO:0035065
Mal2g2187 157 ProSiteProfiles SANT domain profile. 91 143 IPR017884 -
Mal2g2187 157 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 5 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2187 Mal-Chr2 26967719 26969555 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2187 6 143 EF-hand Containing Proteins AT3G07740 47.297 6.31e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mal2g2187 Myb_DNA-binding 2.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2187 K11314 - gmx:100779424 216.853