Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2182 ATGGAGAAGGAAGGTGATGAACTTCAAAGTGTTGCAGTTTCAATGATGTCAGATTCTTCTCTTCTTCATCATCAGTCCAGAAGACCTAGTCTTTCATCTCTACAAATACCAACAAGGACACTAGAAAGTGCATTATCATCTTCTACTAAGACAGATGGTCCTACATTATCAAGTCCAGGTTCCACTAGAGGACTGCCACCAAGGCCACATTCCACTAAAGTGAAGTCATCTATGAGAAACTTACTTTCTGATAGGAGCTTTAGGACAAAAACTTGTTCAGAAGATTCTGAAAAGAGAGTTTTGATTGTTTCTGATACTTTATTATCAGATAATGGTCCTTTGGATAATAAGCCTTCAACTTCAAGGTCACTTTCACTTAATAAGATTTTGTTCCCTTCATCAACAAAAGCGGCACATTCCTTACCGGTTACTCCAATTGCTAATTCAGGTGCATGTGATGTACAAGGAAGACATGTAGGGGGTGATTCCGATTTAAATAAAGTGATAGTGAATAAGCATATGACTCGATCATTTTCAGTTCCGGTTGATGTCAAAGCCACTAATTTAAGGCCTACAACAGATTCTAGGCGTCTGGTTCGCGTAATTTCAGCAAGACCACAGCCAACAACTACTGATGGCATTTCAACCCGCAGTGATTCAATGCAAGAGATTGTCATTGAAGATGCTTCCGAGGATATTCCAGAAGAAGAAGCAGTTTGCAGGATTTGTTTGGTGGAGCTTACTGAAGGGGGAGATACTCTTAGGATGGACTGTAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATCAAAGGAAATAAGACATGTGATGTCTGCAAGCAGGATGTCCGGAATCTTCCAGTAACACTCTTGAAAATATCTAGTCCTCCAACTGTTGTTCGGCAGACATTGAATGCATCACAACAGAGAGCAGTAACTAATTACAGGATCTGGCAGGATGTACCAGTACTTGTCTTGGTCAGCATGCTTGCATACTTTTGCTTTCTGGAGGAACTACTGGTTTCAGATTTGGGCCCACGTGCTCTGGCCATTTCATTGCCTTTCTCCTGCATTTTAGGTCTCCTTTCATCTATAATTGCTTCAACCATGGTGAGCAGAAGTTACATATGGGCTTATGCTTGCTTCCAGTTCGCATTTGTCATCCTGTTTGCTCATATATTCTATTCCATACTTAATGTTAGTGCGATTTTCTCGGTTCTTCTTTCAACATTCACCGGATTTGGGATTTCAATCAGCATGAATTCTCTCCTAATGGAATATATCAGATGGGAAACAAATAGGCAGATTCGATCTTCTAATCAAAATATTATTTCGAGACAACAGCAGCAGCAGCAGCAAGAAACTCAAAGGCAACCACATCAACTGCAAAGGATGCAGCAAGAGCAGCACCAATGA 1440 0.4083 MEKEGDELQSVAVSMMSDSSLLHHQSRRPSLSSLQIPTRTLESALSSSTKTDGPTLSSPGSTRGLPPRPHSTKVKSSMRNLLSDRSFRTKTCSEDSEKRVLIVSDTLLSDNGPLDNKPSTSRSLSLNKILFPSSTKAAHSLPVTPIANSGACDVQGRHVGGDSDLNKVIVNKHMTRSFSVPVDVKATNLRPTTDSRRLVRVISARPQPTTTDGISTRSDSMQEIVIEDASEDIPEEEAVCRICLVELTEGGDTLRMDCSCKGELALAHQDCAVKWFSIKGNKTCDVCKQDVRNLPVTLLKISSPPTVVRQTLNASQQRAVTNYRIWQDVPVLVLVSMLAYFCFLEELLVSDLGPRALAISLPFSCILGLLSSIIASTMVSRSYIWAYACFQFAFVILFAHIFYSILNVSAIFSVLLSTFTGFGISISMNSLLMEYIRWETNRQIRSSNQNIISRQQQQQQQETQRQPHQLQRMQQEQHQ* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2182 479 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 295 IPR013083 -
Mal2g2182 479 MobiDBLite consensus disorder prediction 12 65 - -
Mal2g2182 479 CDD RING_CH-C4HC3_MARCH 240 288 - -
Mal2g2182 479 PANTHER OS02G0165000 PROTEIN 18 464 - -
Mal2g2182 479 MobiDBLite consensus disorder prediction 449 479 - -
Mal2g2182 479 MobiDBLite consensus disorder prediction 73 87 - -
Mal2g2182 479 MobiDBLite consensus disorder prediction 1 90 - -
Mal2g2182 479 PANTHER OS02G0165000 PROTEIN 18 464 - -
Mal2g2182 479 SUPERFAMILY RING/U-box 236 291 - -
Mal2g2182 479 ProSiteProfiles Zinc finger RING-CH-type profile. 232 294 IPR011016 GO:0008270
Mal2g2182 479 Pfam RING-variant domain 240 287 IPR011016 GO:0008270
Mal2g2182 479 SMART ringv_2 239 288 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2182 Mal-Chr2 26879778 26883692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2182 234 294 C3H Transcription Factor Family AT2G37950 48.387 6.76e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2182 - - pvu:PHAVU_006G002500g 614.379