Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g2062 ATGAGAGGAAGAAGCTACAGTCCATCCCCGCCACCGCGTTACAGTAGAAGAGGCGGAGGAGGAAGAAGTCCAAGTCCTCGCCGCCGTTACGCTCCCCGTCAAAGTGATCTACCTACCAGTCTCCTTGTTCGTAATCTTCGCCATGACTGTAGGCCTGAAGATCTTCGTAGACCTTTTGGTCATTTTGGTCCTCTTAAAGACATTTATCTCCCTAAAGATTATTACACTGGACAACCCCGTGGATTTGGTTTTATCCAATTTGTGGATCCTGCGGATGCTGCCGATGCAAAATACCATATGGATGGTCAAGTTCTTCTTGGTAGGGAGCTGACTGTTGTTTTTGCTGAGGAAAATAGAAAGAAGCCAACTGAGATGAGGGTCAGAGAGAGAAGTAGTGGTCGCTATTCTGATCGAAGGAGGTCTCCCCCACGTTATTCTCGTTCACCCCGCTATTCCCGGTCTCCACCTCGTCACAGATCTCGCTCTCGCGGCAGTCGGGACTATTATTCCCCTCCTCCTAAACGAAGGGAATATTCAAGATCTGTATCACCTGAGGATAGAGGGCACAGTCGAGAAAGATCACAGCACAGCGGAGAGAGGTCATACTCACGCTCTCCACCAAAGGATGGGGATGCGAGAAGCCGTAGTCAGAGTCCAGTGAAAGGATCGGTCCAGAGCAGAAGTCCAAGTCCCAGCCGTGATGTCAGGGAAGCATCCCGCAGTAGGTCTCCCAGTCAGTGA 741 0.5074 MRGRSYSPSPPPRYSRRGGGGRSPSPRRRYAPRQSDLPTSLLVRNLRHDCRPEDLRRPFGHFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPTEMRVRERSSGRYSDRRRSPPRYSRSPRYSRSPPRHRSRSRGSRDYYSPPPKRREYSRSVSPEDRGHSRERSQHSGERSYSRSPPKDGDARSRSQSPVKGSVQSRSPSPSRDVREASRSRSPSQ* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g2062 246 Gene3D - 8 130 IPR012677 -
Mal2g2062 246 SMART rrm1_1 40 113 IPR000504 GO:0003723
Mal2g2062 246 MobiDBLite consensus disorder prediction 119 144 - -
Mal2g2062 246 MobiDBLite consensus disorder prediction 1 37 - -
Mal2g2062 246 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 230 - -
Mal2g2062 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Mal2g2062 246 MobiDBLite consensus disorder prediction 161 215 - -
Mal2g2062 246 MobiDBLite consensus disorder prediction 216 232 - -
Mal2g2062 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 110 IPR000504 GO:0003723
Mal2g2062 246 MobiDBLite consensus disorder prediction 119 246 - -
Mal2g2062 246 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 230 - -
Mal2g2062 246 SUPERFAMILY RNA-binding domain, RBD 38 144 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g2062 Mal-Chr2 25310641 25313063 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g2062 39 148 Eukaryotic Initiation Factors Gene Family AT4G34110 30.631 2.79e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g2062 K12900 - gmx:100775883 307.76