Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1992 ATGGGAAGAGGAAGAGTGGAGTTGAAAAGAATTGAGAACAAGATCAACAGACAAGTAACCTTTGCAAAACGAAGGAACGGTCTTTTGAAGAAAGCTTATGAGCTTTCTGTTCTTTGTGATGCAGAGGTTGCTCTCATCGTCTTCTCCAATAGAGGAAAACTCTATGAGTTTTGCAGCACTTCAAGTATGCTCAAAACGCTTGAGAGGTATCAGAAATGTAACTACGGAGCACCTGAGGCTAATGCTACATCAAAGGAAGCGTTGGTATTGGAATTAAGCAGTCAACAGGAATACTTGAAGCTGAAGGCACGTTATGAATCTCTACAACGCTCTCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGATCTTGAAACACTTGAAAGGCAGCTAGATTCCTCCTTGAAGCAAATCAGATCCACAAGGACCCAATTCATGCTGGATCAGCTGGGTGATCTTCAACGTAAGGAACACTTGCTATGTGAGGCAAACAGAGCTCTCAGACAAAGGATGGAAGGGTATCAAATAAATTCACTCCAACTGAATCTGAGTGCTGAAGAAATGGGATATGGGCGTCATCATCCAGGTCAAGACCAGGGTGGTCATGATCTATTTCAACCAATTGAGTGTGAACCAACGTTACAAATTGGATATCAGGCTGATCCAGGATCAGTGGTGACAGCTGGCCCAAGTATGAATAACTACATGGGTGGATGGTTACCATGA 738 0.435 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEANATSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRMEGYQINSLQLNLSAEEMGYGRHHPGQDQGGHDLFQPIECEPTLQIGYQADPGSVVTAGPSMNNYMGGWLP* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1992 245 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Mal2g1992 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mal2g1992 245 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal2g1992 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal2g1992 245 Pfam K-box region 94 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal2g1992 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Mal2g1992 245 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Mal2g1992 245 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Mal2g1992 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal2g1992 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal2g1992 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal2g1992 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal2g1992 245 Coils Coil 128 148 - -
Mal2g1992 245 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 229 - -
Mal2g1992 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1992 Mal-Chr2 24302933 24307981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1992 1 245 MADS-box Gene Family AT1G24260 73.171 2.02e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal2g1992 K-box 1.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1992 - - gmx:100778931 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g1992 2 24302933 24307981 Mal2g1992 2 24302933 24307981 ECH