Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1961 ATGGTGAAGTACTCCAGAGAGCCCGACAATCCCACCAAATCGACCAAAGCGAGAGGTGCTGACCTTAGGGTTCATTTCAAGAACACCAGAGAAACAGCGTTTGCCATCAGGAAGTTGCCCCTGATCAAAGCCAAAAGATACTTGGAAGATGTTTTGGCCCACAAGCAGGCCATTCCTTTCAGACGCTTTTGTCGTGGTGTTGGGAGGACTGCCCAAGCTAAGAACAGACATTCTAATGGGCAAGGACGCTGGCCTGTCAAGTCAGCTAAATTCATTCTTGACTTGCTTAAGAATGCCGAGAGTAATGCTGAGGTGAAAGGTTTGGATGTGGATGCTCTCTACGTGTCTCATATCCAGGTGAACCAGAGCCAGAAGCAACGGAGACGTACCTACAGGGCTCATGGAAGAATCAACCCATACATGTCATCTCCGTGCCACATTGAGCTGATATTATCCGAGAAGGAAGAGGCTGTCCAGAAAGAGCCCGAGACCCAGTTGGCAACAAACAAGAAGAAGTCTCAAGCTCTTTGA 531 0.4859 MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFAIRKLPLIKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQSQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVQKEPETQLATNKKKSQAL* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1961 176 CDD Ribosomal_L22 16 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Mal2g1961 176 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Mal2g1961 176 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Mal2g1961 176 PANTHER 60S RIBOSOMAL PROTEIN L17 1 176 IPR005721 GO:0003735|GO:0006412|GO:0015934
Mal2g1961 176 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Mal2g1961 176 PANTHER 60S RIBOSOMAL PROTEIN L17-2-LIKE 1 176 - -
Mal2g1961 176 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Mal2g1961 176 Gene3D Ribosomal protein L22/L17 1 176 IPR036394 GO:0003735|GO:0005840|GO:0006412
Mal2g1961 176 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1961 Mal-Chr2 23867191 23868830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1961 1 173 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 87.861 1.32e-114 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1961 K02880 - gmx:100499784 335.495