Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1877 ATGGATGATTCTTCTTCAGCAGCTGAAGACACCAAGAATTGTCCTCGCGGTCACTGGCGACCCGCCGAAGATGAAAAGCTTCGCCAACTTGTTGAACAATATGGTGCCCAAAATTGGAATTCAATCGCTGAAAAACTTCAAGGAAGATCAGGGAAAAGTTGTAGGTTGAGGTGGTTCAATCAGCTAGATCCAAGAATTAACAGAAGACCTTTCACAGAAGAGGAAGAAGAGAGACTTCTAGCAGCTCATCGTGTTCATGGAAACAAATGGGCACTAATAGCTAGACTTTTCCCTGGTAGAACTGATAATGCTGTGAAAAATCATTGGCATGTTATTATGGCTAGAAAACAAAGGGAACAATCCAAGTTATGTGGTAAAAGAAGTTTCCATGAAGTTTTTAATAACAATTCTTCTTCTTCTTCTTCCATACTTAACTTCCCTTACACGAGAATCGGTTTTGAGAATGGAAGATTCTATCAATTTCACAACAATCTTGATATTGATGCTCCTTCTAGTTCTATTGCTTCTTGGAATTTTGCTTCTATGTCAACAAAAACTACTACTACTGCTACTACTACGAGTTCTCTCTTACCGGATAATTCTATTTCGAAAAAAGGATCTAATATTTATAAAGGCTCGGATAGATCATTTCTCTACAGAATTTGTCCAAATCAAACATTCTCATCATCACTTCCAAGTTACAAGAGGGTTGTTCCAAATTCTTTTGGTGTTTTTAGTTCTTCTGATGGTGGAGGGACAAAGAAGGATTTCATGAGTAGTTTATGGGAAAACTCTTCGACGTTAATCACAAACTTAAAGTCTTCCAAGGAGAAAGAGCTGCAAGAAGATCACGACGAAGTCGATGTTGATCAACACAAAGAAGTTCCTTTCATTGATTTTCTTGGCGTTGGTGTGTCTTCATCATAG 927 0.3808 MDDSSSAAEDTKNCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRVHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFHEVFNNNSSSSSSILNFPYTRIGFENGRFYQFHNNLDIDAPSSSIASWNFASMSTKTTTTATTTSSLLPDNSISKKGSNIYKGSDRSFLYRICPNQTFSSSLPSYKRVVPNSFGVFSSSDGGGTKKDFMSSLWENSSTLITNLKSSKEKELQEDHDEVDVDQHKEVPFIDFLGVGVSSS* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1877 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mal2g1877 308 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Mal2g1877 308 SMART sant 67 115 IPR001005 -
Mal2g1877 308 SMART sant 15 64 IPR001005 -
Mal2g1877 308 Gene3D - 16 67 - -
Mal2g1877 308 Gene3D - 70 131 - -
Mal2g1877 308 PANTHER MYB PROTEIN-RELATED 5 306 - -
Mal2g1877 308 CDD SANT 19 60 IPR001005 -
Mal2g1877 308 CDD SANT 79 110 IPR001005 -
Mal2g1877 308 MobiDBLite consensus disorder prediction 1 21 - -
Mal2g1877 308 ProSiteProfiles Myb-like domain profile. 11 62 IPR001005 -
Mal2g1877 308 PANTHER TRANSCRIPTION FACTOR MYB56 5 306 - -
Mal2g1877 308 Pfam Myb-like DNA-binding domain 19 79 - -
Mal2g1877 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 62 IPR017930 -
Mal2g1877 308 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1877 Mal-Chr2 22686685 22687822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1877 14 123 MYB Transcription Factor Family AT1G17950 83.636 7.47e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal2g1877 Myb_DNA-bind_6 2.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1877 K09422 - gmx:100817328 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g1877 2 22686685 22687822 Mal2g1877 2 22686685 22687822 ECH