Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1806 ATGTCTTCAACGTTACTTGAAGTTACTCGTGCGGCACACGAGGAGGTTGAGCGATTTGAGAGGGTAATAGTGAAGGATCTTCAGAATGAACCCACATCCAACAAGGACCGTTTGTTTCAGAGCCACCGTGTTCGAAATATGATCGACACCATCACTTCCACCACTGAACGACTTATTGAGATTTATGATGACAAAGATAATGCAAGGAAGGATGAGATTGCTGCACTTGGTGGACAAACTGCTACTGGAACCAATGTTTTTAGTGCTTTCTACGATAGACTCAAAGAGATACGAGAGTATCACAGGAAGCACCCGGCTGCACGCGTTGTTGATGCTAATGACGATTTCGAAGCTCTTCTTAAAGAGGAACCTCAAATTGAGTTCAGTGGAGAGGAAGCTTTTGGTCGATACTTAGACCTGCATGAGTTATACCATCAGTATGTCAATTCTAAGTTTGGAGAGCCAATTGAGTATTCTGCATACCTTGATATTTTTTCTGAGACAGATAAGATTCCTCGCAAAATGAAAGCAACCAGGCAGTACAGGGAGTACTTGGAGAATCTGTTGGAGTATCTGATATATTTTTTCCAGCGGACAGAACCCCTGCAAGATCTTGATCGAATCTTTTCAAAGGTAACAACCGAGTTTGAAGAAAATTGGGCTACTGGAAGGGTACTGGGATGGGAAAATGTCAATCAGGACAATGGACATGTTCCTGCTCAGCACACTGCAATTGATCTTGATTATTACAGTACAGTTGAAGAGCTTCTGGAAGTGGGTCCTGAAAGATTAAAGGAGGCGCTTGCTGCATTGGGACTCAAGACTGGTGGCACTATTCAGCAACGTGCAGAGAGGCTCTTCCTCACAAAGCACACGCCTCTTGAGAAGTTGGACAAGAAGCATTTTGCCAAGGGGGCGCGTGGTTTAGAAAAAAATGGGGTTGCTGCTGCTCCACAAGAAGGAAATTTAAAAGAAATTGCATTAATGGAGGCCAAAATGAATAAACTGTGTGATTTGTTGGATGAGACAATTACTCGAACAAAAGACAATGTTGTAAAGAAGCAGGCCCTAACATACGAGGAAATCGAAGCAGAACGTGAGGAGGAAGAGACTCAAGAGGACTCTGAAAGCGAAGATGATGAACAGCAGATTTATAATCCCTTAAAATTACCAATGGGATGGGATGGGAAGCCTATACCTTACTGGCTGTATAAGCTACATGGTCTGGGTCAGGAATTTAAGTGTGAGATATGTGGGAACTACAGTTATTGGGGGCGTCGTGCTTTTGAACGACATTTTAAAGAATGGCGTCATCAACATGGGATGCGATGCCTTGGTATACCAAATACCAAGAACTTCAATGAAATTACATCAATTGAGGAAGCAAAAGAGCTCTGGAAGAAGATACAGCAGAGACAGGGAGTGAACAAGTGGCGCCCAGATCTAGAGGAAGAGTACGAAGACAAAGAAGGCAACATCTATAATAAGAAGACATATACTGATTTACAACGCCAAGGACTGATATGA 1527 0.4289 MSSTLLEVTRAAHEEVERFERVIVKDLQNEPTSNKDRLFQSHRVRNMIDTITSTTERLIEIYDDKDNARKDEIAALGGQTATGTNVFSAFYDRLKEIREYHRKHPAARVVDANDDFEALLKEEPQIEFSGEEAFGRYLDLHELYHQYVNSKFGEPIEYSAYLDIFSETDKIPRKMKATRQYREYLENLLEYLIYFFQRTEPLQDLDRIFSKVTTEFEENWATGRVLGWENVNQDNGHVPAQHTAIDLDYYSTVEELLEVGPERLKEALAALGLKTGGTIQQRAERLFLTKHTPLEKLDKKHFAKGARGLEKNGVAAAPQEGNLKEIALMEAKMNKLCDLLDETITRTKDNVVKKQALTYEEIEAEREEEETQEDSESEDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1806 508 Coils Coil 352 379 - -
Mal2g1806 508 Pfam SF3a60/Prp9 C-terminal 389 508 IPR024598 GO:0000398|GO:0003723|GO:0005681
Mal2g1806 508 MobiDBLite consensus disorder prediction 362 381 - -
Mal2g1806 508 Pfam Replication stress response SDE2 C-terminal 225 304 - -
Mal2g1806 508 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676|GO:0005634|GO:0008270
Mal2g1806 508 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 176 IPR031774 -
Mal2g1806 508 MobiDBLite consensus disorder prediction 361 381 - -
Mal2g1806 508 Pfam Splicing factor SF3a60 binding domain 80 105 IPR021966 -
Mal2g1806 508 PANTHER BNAA03G01920D PROTEIN 1 508 - -
Mal2g1806 508 PANTHER SPLICING FACTOR SF3A-RELATED 1 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1806 Mal-Chr2 21682092 21688948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1806 1 508 C2H2 Transcription Factor Family AT5G06160 75.639 0.0 766