Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1789 ATGGAGTTGGATAGCATTGAGTGTGTGTCATCTTCTGATGGTATGGATGAGGATGAGATCCATTCACATCATCATCATCACTCTGAATTTTCTTCCACAAAGGCTAGAAATGGAGGTGCAAATATCAATATTTTGGGTCCCACCGCCATTGCCCCTGCAACCAGTGTTCATGAATTGCTTGAATGTCCTGTTTGTACTAATTCAATGTACCCTCCAATTCATCAGTGTCACAACGGCCACACTCTATGTTCCACATGCAAAACACGGGTGCATAACCGATGTCCGACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTAGCACTGGAGAAGGTGGCTGAATCACTCGAGTTACCGTGCAAGTACTACTCCCTCGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGTAATTTTAGACCTTACAGCTGTCCTTATGCTGGATCAGAGTGTTCAACTGTTGGCGATATTTCCTTCCTTGTTGCTCATTTGAGGGATGATCATAAGGTGGACATGCACACCGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCCCGTGAAGTAGAGAATGCAACCTGGATGCTCACGGTATTTCATTGTTTCGGCCAATATTTCTGCCTTCATTTCGAAGCTTTTCAGCTCGGCATGGCCCCTGTTTACATGGCATTCCTTCGGTTTATGGGCGACGAAAACGAAGCTCGGAACTACAGCTATAGCCTAGAAGTTGGGGCCAATGGTAGAAAACTAATTTGGGAGGGTACGCCACGAAGTGTTCGGGATAGCCACCGTAAAGTTAGGGATAGCCATGATGGTCTCATCATTCAAAGAAATATGGCACTATTTTTCTCTGGTGGGGATAGGAAGGAGCTGAAACTTAGAGTCACTGGAAGAATATGGAAGGAACAGAATCAAGATGCTGCAGTGTGCATACCTAATCTATGTAGCTGA 972 0.4465 MELDSIECVSSSDGMDEDEIHSHHHHHSEFSSTKARNGGANINILGPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSTVGDISFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNQDAAVCIPNLCS* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1789 323 CDD RING-HC_SIAHs 60 98 - -
Mal2g1789 323 MobiDBLite consensus disorder prediction 1 35 - -
Mal2g1789 323 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 315 - -
Mal2g1789 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 114 IPR013083 -
Mal2g1789 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 166 IPR013083 -
Mal2g1789 323 Pfam Seven in absentia protein family 104 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mal2g1789 323 SUPERFAMILY RING/U-box 54 102 - -
Mal2g1789 323 CDD Sina 176 304 - -
Mal2g1789 323 SUPERFAMILY TRAF domain-like 115 307 - -
Mal2g1789 323 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 303 IPR008974 GO:0005515
Mal2g1789 323 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
Mal2g1789 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 315 - -
Mal2g1789 323 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1789 Mal-Chr2 21479596 21482673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1789 29 310 C3H Transcription Factor Family AT2G41980 75.177 5.97e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1789 K04506 - gmx:100810573 636.336