Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1780 ATGATATCTCCAGCTCAGCCACCTATGCATCACCATCAAGCCCAACCCCCATCTTCTCCATTAATATCAAAGTCATCATCCGGAGTAGACTTCAGTCCACCCTTAATAGCAATGGTTGTCGTAGTCGCCGCCGCCTTCGTCCTCGTAACCTACTCCCGCCTCATAACCCGCCATCTTTCCCCTCCAATCCACCGTCTAATCCAACGCTTCCACCGCCGTCCTCCCTCCTCCTCCTTAGGTGACATCGAATCCCTTCAATACGATTCCGCAACTTTCGAAACACCACTCACCTACGGCTTAGATGAATCCGTTATAAAAACTATTCCATTCTTCATCTACACAACTAAATACGAACAAGAATCTCGCCGTGACTGCGCTGTTTGTTTGCTTGAATTCGAAGATCACGATTACGTTCGTACTCTTCCTCTCTGTTCTCACACTTTTCATCTTGATTGCATTGATGCTTGGCTTCGTTCACACGCTAACTGTCCACTCTGTCGCTCTCTTCTTCTCTGTGAGTCTCCGTTCAGACCTCTCATGGCTGCTAGAATTCGTCCTTCGTTTCATGACCAAACTAATGCTCTTCATATCGACACGCCGGCGCCGGAGATTACTCCTCATTCTCCTGTTATGAATAATGTCGATGAAAATCGCTTTACCGGACGGGAAGATTTTCTGTTGAAACGTTCTTATTCGTTTGGATTTGAACGGAGCTTGCCGTCGGAGAGGATGGTAAATGATCCTGCCACGACTTCGCCGTGGCGGTACCGGAGAGGGAATAACAGTTTCTGGAGTAAAAGACCGTCTCCGTTTGGTTCATTAGGGAAATCGAGAGTTTTTTCATTCAGGTATTACAGAGGAATGAAATCTCCGTTTTTCCGGCGGAGAGGATTCTTTCCGTTATCGGAGTCGAGTGTTAGATACGCCGGCGACGGAGGGAGTTCGTGGCGGAGGAGCAAGTCAATTGCGAGTCCGATGTTTTCGAGATCTTCAGCGGCGGTGTTCTCGTCTAGCCGGCTGAGGTGCGGTGATCCGGAGGCGTTACTTTCGCCGGAGAGATTCAACCGGCGACGGTGA 1077 0.4921 MISPAQPPMHHHQAQPPSSPLISKSSSGVDFSPPLIAMVVVVAAAFVLVTYSRLITRHLSPPIHRLIQRFHRRPPSSSLGDIESLQYDSATFETPLTYGLDESVIKTIPFFIYTTKYEQESRRDCAVCLLEFEDHDYVRTLPLCSHTFHLDCIDAWLRSHANCPLCRSLLLCESPFRPLMAARIRPSFHDQTNALHIDTPAPEITPHSPVMNNVDENRFTGREDFLLKRSYSFGFERSLPSERMVNDPATTSPWRYRRGNNSFWSKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSVRYAGDGGSSWRRSKSIASPMFSRSSAAVFSSSRLRCGDPEALLSPERFNRRR* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1780 358 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Mal2g1780 358 MobiDBLite consensus disorder prediction 1 25 - -
Mal2g1780 358 CDD RING-H2_PA-TM-RING 124 167 - -
Mal2g1780 358 Pfam Ring finger domain 124 167 IPR001841 -
Mal2g1780 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 171 IPR013083 -
Mal2g1780 358 SMART ring_2 125 166 IPR001841 -
Mal2g1780 358 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 333 IPR044675 -
Mal2g1780 358 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 333 - -
Mal2g1780 358 SUPERFAMILY RING/U-box 109 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1780 Mal-Chr2 21376649 21377725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1780 18 357 C3H Transcription Factor Family AT3G18930 50.513 2.37e-95 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1780 - K19041 gmx:100806115 457.988