Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1709 ATGGCTGTTGCTGAAAATGTTGGTGCCAAAATCGGTTCTTCAAGTCAGAATTTGGACAACAACAACAACAACAACGTTGTATCATCTGACTCAACTGAGGTGGAGAAATCAAAACCGAGGACCGATCAGGATGTGAACAACAACGGTGTGTTCAACCATCAGCACCAGAATGGTAATTATAGCTTCAAGACTCATCAAATGGGTCAGATGCATGCTAATGGGGTTCAGAACCAGCAGTTTGTGGTGAACAATGATGGGTATGTGATGAATGGTGTCAGAAATGGTGAGAATGGGGGCGAGAGTTTCAAGCGCGAAATGAGGGATTTGGAAGAGTTGTTGTCTAAGCTGAATCCCATGGCTGAGGAATTTGTGCCCCCATCACTAACAAATAATCATGGTTACTTAGCTGCTGGACCTGCTGCTGGGTTTGGTTACCCTAACAATTTTATACTTCTCAATAATTATGCTAATAATGCTAACGGCCAGACTAACCGTAGGAGGAAGAATGGCTACACTACTAACGGGAAGCGAAGAGCGAATCATAAAGTAGATATGGAGAAAAGAGAGGAGATGATCAGGAGGACTGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCATCCCTCTTTCTTAATTGCGGCCAGGTTGTTGATTGTCGTGTATGCGGAGATCCCAATTCCATTCTCCGATTTGCCTTCATTGAGTTTACAGATGAAGAAAGTGCAAGGGCTGCTGTAAGCCTGTCTGGAACTATGCTGGGATATTATCCATTGAGAGTGCTGCCTTCCAAAACTGCCATTGCACCTGTCAATCCGACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTACTGCACAAACATTGACAAGAAGCTGACTCAAGCAGATGTGAAACACTTCTTTGAATCTATCTGTGGAGAGGTCCAACGACTGAGGCTTCTTGGGGATTACCAGCATTCAACTCGGATTGCATTTGTTGAGTTCACAGTGGCTGAGAGTGCAATTGCAGCTCTAAGCTGCAGTGGCGTGATTTTGGGTGCGCTGCCTATAAGGGTAAGTCCGTCAAAGACACCAGTCCGTGCTCGTTCTCCTCGTAGTCCATGA 1134 0.4497 MAVAENVGAKIGSSSQNLDNNNNNNVVSSDSTEVEKSKPRTDQDVNNNGVFNHQHQNGNYSFKTHQMGQMHANGVQNQQFVVNNDGYVMNGVRNGENGGESFKREMRDLEELLSKLNPMAEEFVPPSLTNNHGYLAAGPAAGFGYPNNFILLNNYANNANGQTNRRRKNGYTTNGKRRANHKVDMEKREEMIRRTVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAAVSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYQHSTRIAFVEFTVAESAIAALSCSGVILGALPIRVSPSKTPVRARSPRSP* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1709 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 367 IPR000504 GO:0003723
Mal2g1709 377 SUPERFAMILY RNA-binding domain, RBD 184 270 IPR035979 GO:0003676
Mal2g1709 377 MobiDBLite consensus disorder prediction 1 48 - -
Mal2g1709 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 269 IPR000504 GO:0003723
Mal2g1709 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 355 IPR000504 GO:0003723
Mal2g1709 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 259 IPR000504 GO:0003723
Mal2g1709 377 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 376 - -
Mal2g1709 377 Gene3D - 278 374 IPR012677 -
Mal2g1709 377 Gene3D - 153 271 IPR012677 -
Mal2g1709 377 MobiDBLite consensus disorder prediction 9 32 - -
Mal2g1709 377 SUPERFAMILY RNA-binding domain, RBD 282 372 IPR035979 GO:0003676
Mal2g1709 377 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 376 - -
Mal2g1709 377 SMART rrm1_1 195 265 IPR000504 GO:0003723
Mal2g1709 377 SMART rrm1_1 292 363 IPR000504 GO:0003723
Mal2g1709 377 CDD RRM2_CID8_like 287 368 IPR034825 -
Mal2g1709 377 CDD RRM1_CID8_like 192 271 IPR034823 -
Mal2g1709 377 Pfam Ataxin-2 C-terminal region 113 127 IPR009818 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1709 Mal-Chr2 20472171 20476472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1709 193 355 Eukaryotic Initiation Factors Gene Family AT1G34140 25.749 1.14e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1709 - - gmx:106794116 578.941