Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1708 ATGGCGGTAGCTGAGAATGTTGGAACCAAAATCGATTCTTCCAGTGAGAATTTGGACAACACTGTTGTTTCATCGGACTCAACGACTGAGGTTGAGAAATCCAAACCCAAAACCGATCAGAATCTGAACAACAACAACAACGGTGTGATCAATCATCAACAACAAGAGAGTGTTCCAAATGGTAACCATGGTTTCAAGGCTCATCAAATGGGTCAGATGCATGGTAATGGGGTTCAGAATCAGCATTTGGTTGATGGGTTTGGTGAGAATGGGGGTGAGAGTTTCAAGCGTGAGATGAGGGATTTGGAGGAGTTGTTGTCAAAGCTGAATCCTATGGCTGAGGAATTCGTGCCACCATCACTGATAACTAATTATCATGGCTACTTAGCTGCTGGTGCTGGACCTAATGCTGGGTTTGGTTACCCTAATAACAATTTTATGCTTCAGAATAATTTTGGCAATGCTAATGCTAATAATGGACAGATTAACAGAAGGAGGAAGAATGGCTATAATAATGCTAAGCGAAGAGTGTATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTCGCAGGACTGTTTATGTGTCTGACATTGATCAACTGGTCACTGAAGAGCAGCTGGCAGCTCTCTTTCTTAACTGCGGCCAGGTTGTTGATTGCCGTGTATGTGGGGATCCCAATTCCATTCTTCGGTTTGCATTCGTTGAGTTTACTGATGAAGTTGGTGCTAGGACTGCTTTGAACCTGTCTGGAACCATGCTCGGGTATTATCCATTGAGAGTGCTACCTTCAAAGACTGCTATTGCACCTGTGAATCCAACATTTTTGCCCAGGTCTGAAGATGAAAGAGAGATGTGCACTAGAACAATTTACTGCACAAATCTCGACAAGAAGCTTACTCAAGCAGATGTCAAGCAGTTCTTTGAATCTATTTGTGGAGAGGTTCAACGCCTGAGGCTTCTTGGGGATTACCATCATTCAACTCGGATTGCTTTTGTGGAGTTTGCAGTGGCTGAGAGTGCAATTGCAGCACTGAGCTGTAGCGGTGTGGTTTTGGGTTCACTGCCTATAAGGGTAAGTCCATCAAAGACACCAGTCCGAGCTCGTGCAGTTCGTACTCCCATGCACTGA 1134 0.44 MAVAENVGTKIDSSSENLDNTVVSSDSTTEVEKSKPKTDQNLNNNNNGVINHQQQESVPNGNHGFKAHQMGQMHGNGVQNQHLVDGFGENGGESFKREMRDLEELLSKLNPMAEEFVPPSLITNYHGYLAAGAGPNAGFGYPNNNFMLQNNFGNANANNGQINRRRKNGYNNAKRRVYHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFVEFTDEVGARTALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCTRTIYCTNLDKKLTQADVKQFFESICGEVQRLRLLGDYHHSTRIAFVEFAVAESAIAALSCSGVVLGSLPIRVSPSKTPVRARAVRTPMH* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1708 377 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 377 - -
Mal2g1708 377 MobiDBLite consensus disorder prediction 8 29 - -
Mal2g1708 377 SUPERFAMILY RNA-binding domain, RBD 280 370 IPR035979 GO:0003676
Mal2g1708 377 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 377 - -
Mal2g1708 377 CDD RRM2_CID8_like 285 366 IPR034825 -
Mal2g1708 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 365 IPR000504 GO:0003723
Mal2g1708 377 MobiDBLite consensus disorder prediction 38 56 - -
Mal2g1708 377 CDD RRM1_CID8_like 190 269 IPR034823 -
Mal2g1708 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 257 IPR000504 GO:0003723
Mal2g1708 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 358 IPR000504 GO:0003723
Mal2g1708 377 SUPERFAMILY RNA-binding domain, RBD 179 269 IPR035979 GO:0003676
Mal2g1708 377 SMART rrm1_1 193 263 IPR000504 GO:0003723
Mal2g1708 377 SMART rrm1_1 290 361 IPR000504 GO:0003723
Mal2g1708 377 MobiDBLite consensus disorder prediction 1 56 - -
Mal2g1708 377 Pfam Ataxin-2 C-terminal region 106 120 IPR009818 -
Mal2g1708 377 Gene3D - 151 269 IPR012677 -
Mal2g1708 377 Gene3D - 276 371 IPR012677 -
Mal2g1708 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 267 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1708 Mal-Chr2 20443930 20448942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1708 191 353 Eukaryotic Initiation Factors Gene Family AT1G34140 28.144 2.08e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1708 - - gmx:100788102 562.762