Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1706 ATGAGTAGTCGCTTTTCTCGCACAATCTATGTCGGCAACCTGCCCGCTGATATAAGAGAATCTGAAATTGAAGATCTGTTCTACAAGTATGGCCGCATAATGGAAATTGAATTGAAGGTTCCTCCTCGTCCTCCATGTTACTGTTTTGTTGAGTTTGACAATGCTCGAGATGCGGAAGATGCAATTCGGGGTCGTGATGGTTACAACTTTGATGGTTGTCGATTAAGGGTGGAGCTCGCCCATGGAGGTAGAGGGCCATCATCAAGTGATCGACGTGGGTATGGTGGTGGTGGTGGCGGCAGAGGCGGCGGCGACGGTGCTGGTGGGGGCCGTTTTGGCGTCTCACGTCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCTTCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGCGATGTATGTTTTGCTGAAGTTTCTCGTGACAGTGAAGGGACTTTTGGCCTTGTTGATTATACTAATTATGATGACATGAAATATGCTATGCGGAAACTGGATGACACCGAGTTTAGAAATCCTTGGGCGAGATCATATATTCGGGTGAGGAAGTATGAAAGCAGCCGTTCAAGGAGCCGCAGCAGAAGCCCAAGCAGGAGCAGAAGTCCAAAAAGGGCAAGAAGTAGATCTTTGGAGCGATCTGTGTCTAGGTCACGGTCCATTTCCAGATCCAGATCCAGATCAGCATCACCAATCAAGCCTTCCAGGCCAAGATCACCATCACGTTCAGCTTCTCCGCGATCACCACGCCAGGTTCTATCTGGTAGCGGTTGA 807 0.487 MSSRFSRTIYVGNLPADIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGRGGGDGAGGGRFGVSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNYDDMKYAMRKLDDTEFRNPWARSYIRVRKYESSRSRSRSRSPSRSRSPKRARSRSLERSVSRSRSISRSRSRSASPIKPSRPRSPSRSASPRSPRQVLSGSG* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1706 268 MobiDBLite consensus disorder prediction 231 268 - -
Mal2g1706 268 MobiDBLite consensus disorder prediction 81 110 - -
Mal2g1706 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Mal2g1706 268 CDD RRM1_SF2_plant_like 8 79 - -
Mal2g1706 268 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 259 - -
Mal2g1706 268 MobiDBLite consensus disorder prediction 195 268 - -
Mal2g1706 268 CDD RRM2_SF2_plant_like 120 195 - -
Mal2g1706 268 SMART rrm1_1 121 194 IPR000504 GO:0003723
Mal2g1706 268 SMART rrm1_1 8 78 IPR000504 GO:0003723
Mal2g1706 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 184 IPR000504 GO:0003723
Mal2g1706 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Mal2g1706 268 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 2 259 - -
Mal2g1706 268 Gene3D - 2 119 IPR012677 -
Mal2g1706 268 Gene3D - 120 197 IPR012677 -
Mal2g1706 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Mal2g1706 268 MobiDBLite consensus disorder prediction 216 230 - -
Mal2g1706 268 SUPERFAMILY RNA-binding domain, RBD 6 187 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1706 Mal-Chr2 20401048 20404549 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1706 2 204 Eukaryotic Initiation Factors Gene Family AT4G34110 23.585 5.89e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1706 K12890 - gmx:100800653 348.977