Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1628 ATGGAAAAGGAGAAAGAGAAAGAGTTGGTTGAATTGTACGAATCCGCGAAGAAAGCGGCAGATGCTTCCACCTTCTCCGATAGTCCTCACGAAGAAAGCCGATGCATTGATGCGCTTGAGCAGCTCAAGAATTTTCCGGTCAATTACAAAATTCTCGTCAATACCCAGGTGGGAAAACATCTTAAAGTTCTCACCAAGCATCCCAGGGAGCAAATTCGGGCTTTCGCTGTTGACCTGATTGCGATATGGAAAGACATAATTATCAAGGAAACAAGTAAAAATAAGAATGGGGCCTCTGATTCCAAGGTTGAGTCAACAAATGGGGAGAGAGCTAAAGCAGGGAAATTGCTAAAGAGTCCTTCAGTGAAGGTTGAGAAAGGAGAAAGTGCCAAGGTGGAGAAAATTAATGGGAATGGTTCATCAAAGCTGAGCTCTGAAAATGTAAAGGCACAAAATGTGGATGCCAAAATTGAGAAAACTGATCGTACCTCAAGCATCAAAGTGAAGGAGGAAAAACCAGTTTCTGTGGCAAAGAAAATTTCATCCAGCGCTGCCACTCCACCTAAGCTGAAGACTATGATCAAATCTAACGATTCAGCGCGAGACAAAATAAGGGAACTTCTCCGAGATGCTTTATCTAAGGTCTTTGAAGAGGCAGATGAAGATATGATGGATGAAGTTAATGCATGTGACCCTATTCGTGTTGCAGTGACAGTGGAGTCTGTATTATTTGAAAATTGGGGTCCTTCAAATGGAGCCCAAAAGGTCAAGTATAGGTCCTTAATGTTTAATCTTAAGGATCAGAAAAACCCTGATTTCCGGAGAAAAGTTCTCCTTGGTGTTGTTGAGGCACAGCGGCTGGTCAACATGACCTCAGCTGAAATGGCTAGTGAGCAAAGGAAGCAGGAGAATGAGAAAATCGAGAAGAAAGCTTTGTTCGACTGTGAGCGTGGACTTCAACCAAAAGCTACAACTGATCAGTTTAAGTGTGGTCGGTGTGGACAAAGGAAAACCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACTTGTGTTAACTGCAACAACCGTTGGAAGTTTTGTTAG 1107 0.4291 MEKEKEKELVELYESAKKAADASTFSDSPHEESRCIDALEQLKNFPVNYKILVNTQVGKHLKVLTKHPREQIRAFAVDLIAIWKDIIIKETSKNKNGASDSKVESTNGERAKAGKLLKSPSVKVEKGESAKVEKINGNGSSKLSSENVKAQNVDAKIEKTDRTSSIKVKEEKPVSVAKKISSSAATPPKLKTMIKSNDSARDKIRELLRDALSKVFEEADEDMMDEVNACDPIRVAVTVESVLFENWGPSNGAQKVKYRSLMFNLKDQKNPDFRRKVLLGVVEAQRLVNMTSAEMASEQRKQENEKIEKKALFDCERGLQPKATTDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVNCNNRWKFC* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1628 368 CDD Zn-ribbon_TFIIS 321 367 - -
Mal2g1628 368 PIRSF TFIIS 3 368 IPR035100 -
Mal2g1628 368 Coils Coil 190 210 - -
Mal2g1628 368 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 102 IPR035441 -
Mal2g1628 368 Pfam Transcription factor S-II (TFIIS), central domain 197 314 IPR003618 GO:0006351
Mal2g1628 368 ProSiteProfiles TFIIS N-terminal domain profile. 11 90 IPR017923 -
Mal2g1628 368 ProSiteProfiles Zinc finger TFIIS-type profile. 326 366 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mal2g1628 368 SMART mid_6 202 306 IPR003618 GO:0006351
Mal2g1628 368 SUPERFAMILY Elongation factor TFIIS domain 2 186 298 IPR036575 GO:0006351
Mal2g1628 368 SMART TFS2_5 12 89 IPR003617 GO:0005634
Mal2g1628 368 Coils Coil 290 310 - -
Mal2g1628 368 Pfam TFIIS helical bundle-like domain 38 87 IPR017923 -
Mal2g1628 368 ProSitePatterns Zinc finger TFIIS-type signature. 330 365 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mal2g1628 368 SUPERFAMILY Zinc beta-ribbon 307 366 - -
Mal2g1628 368 Pfam Transcription factor S-II (TFIIS) 328 366 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mal2g1628 368 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 28 102 IPR035441 -
Mal2g1628 368 TIGRFAM TFSII: transcription elongation factor S-II 20 368 IPR006289 GO:0003676|GO:0005634|GO:0006368
Mal2g1628 368 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 6 368 - -
Mal2g1628 368 SMART Cys4_2 328 367 IPR001222 GO:0003676|GO:0006351|GO:0008270
Mal2g1628 368 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 6 368 - -
Mal2g1628 368 CDD TFIIS_I 13 87 - -
Mal2g1628 368 Gene3D - 297 368 - -
Mal2g1628 368 Gene3D - 189 296 IPR036575 GO:0006351
Mal2g1628 368 ProSiteProfiles TFIIS central domain profile. 200 323 IPR003618 GO:0006351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Mal2g1628 TFIIS_M 8.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1628 K03145 - gmx:100811982 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g1628 2 19644677 19649660 Mal2g1628 2 19644677 19649660 ECH