Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1568 ATGGATTTCGACGAGTACGAATACTTGGAGAAGACAGTGGAGGTGCTAGAAGACAAAGACTCTTCTAAGAAGAAGAAGGAAAGCGGCGACAAAACCGAACGGAGCCACCGAAAGCGCGATGAGATCGAAGAAGGTACCGAAGAGAAGAGGAGCAAGAGGTCCAGCGGTGACGACGACCGCGACAAGGAGCGTCATAGGAGTGGCAGAGATAGGGATAGAGACAGAGACGGTGAGAGAAGTAGCAGAGACAGAGACCGAGACAGGGAGAGGGAGAAAGATAGGGATAGAGAGAGAGATAGGAGAGAGAAGGAGAAAGAGAGAGAAAGGAGGGAGAGGGAGAAGGAAAAGGATAGAGAAAGGTCTCGGAGGAGTAAGAGTCGTTCTGAGAGAGATAGAGAGATTGAAAGGGAGGAGAGAGAGAGGTCTCGGAGAAGCATAAGTCGTTCTGAACGAGACAGGGAGAGAGAACGGGAGGAGAGAGACAGGTCTCGGAGGAGTAGAAGTCGTTCCGACCGTGATTTCGATACGAGAGATAGCAGGAGATTTAGGGAGAAGAAAGAAGCTGTCGAGCCGGAGGCAGATCCAGAAAGGGATCAAAGAACTGTTTTTGCCTATCAGATGCCCTTAAAGGCAACAGAAAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGTCTGATCATGGATAGGAACTCTAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCGGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTTGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTAGTTCAATCTAATACTACTACTGGAGCTGCTGGTGTGGTAGGACCATATGGAGCTGTGGACAGAAAACTGTATGTGGGGAACCTTCACTTCAATATGACTGAGAGCCAGTTGAGAGAGATTTTTGAGCCATTTGGTACTGTGGAGGTTGTGCAACTGCCCCTTGACATGGAGACAGGACATTGCAAGGGTTTTGGGTTTATTCAATTTGCCCATATAGAGCATGCCAAGGCTGCCCAGAGTTTAAATGGAAAATTGGAAATTGCTGGCAGAACTATCAAGGTTTCATCGGTAGCTGACCATATTGGAAGCCAAGATACAACAACAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGCTGGATCGCTCTGGAATTACTGCAAGCATTGGTTTACCCATGAATGGGGTGCCTTCTGCTCAGCAGGCTATTAGTTTGCCTATTGGTAATCCTGGGTTAATACAAGGATTGGCTCTACCAACTCAAATTATGCCTACCCAAGTGGCCGAACCTGTCGGAACCCCCAGCAAGTGTTTACTGTTGAAGAATATGTTTGATCCAACTACTGAGACAGAGCCAGATTTCGATCTAGACATCAAAGAAGATGTAGAAGAAGAGTGTTCTAAATATGGGAGAGTAAAGCATATATATGTCGACAAAAATAGTGCAGGTTTTGTGTATTTGATGTTCGAAACGGTGGAAGCAGCAAGTGCTGCTCAGCGTGCAATGCACATGAGGTGGTTTGCACGCAAAATGATTTCAGCTATATACATGCAACCTCAGGATTATGAAGCCAAGTTTAAAGGGGAAGTTTGA 1698 0.4576 MDFDEYEYLEKTVEVLEDKDSSKKKKESGDKTERSHRKRDEIEEGTEEKRSKRSSGDDDRDKERHRSGRDRDRDRDGERSSRDRDRDREREKDRDRERDRREKEKERERREREKEKDRERSRRSKSRSERDREIEREERERSRRSISRSERDREREREERDRSRRSRSRSDRDFDTRDSRRFREKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDMETGHCKGFGFIQFAHIEHAKAAQSLNGKLEIAGRTIKVSSVADHIGSQDTTTKSADFDDDEGGLALNAQSRALLMQKLDRSGITASIGLPMNGVPSAQQAISLPIGNPGLIQGLALPTQIMPTQVAEPVGTPSKCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQDYEAKFKGEV* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1568 565 Coils Coil 94 122 - -
Mal2g1568 565 SUPERFAMILY RNA-binding domain, RBD 135 275 IPR035979 GO:0003676
Mal2g1568 565 TIGRFAM SF-CC1: splicing factor, CC1-like family 82 560 IPR006509 GO:0003723|GO:0005634|GO:0006397
Mal2g1568 565 CDD RRM3_RBM39_like 470 552 - -
Mal2g1568 565 CDD RRM1_RBM39_like 201 273 - -
Mal2g1568 565 Coils Coil 139 166 - -
Mal2g1568 565 CDD RRM2_RBM23_RBM39 304 376 - -
Mal2g1568 565 SUPERFAMILY RNA-binding domain, RBD 302 557 IPR035979 GO:0003676
Mal2g1568 565 Gene3D - 193 286 IPR012677 -
Mal2g1568 565 PANTHER CC1-LIKE SPLICING FACTOR 1 563 - -
Mal2g1568 565 SMART rrm1_1 303 376 IPR000504 GO:0003723
Mal2g1568 565 SMART rrm1_1 201 273 IPR000504 GO:0003723
Mal2g1568 565 SMART rrm1_1 472 549 IPR000504 GO:0003723
Mal2g1568 565 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 494 545 IPR000504 GO:0003723
Mal2g1568 565 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 374 IPR000504 GO:0003723
Mal2g1568 565 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 269 IPR000504 GO:0003723
Mal2g1568 565 Gene3D - 466 564 IPR012677 -
Mal2g1568 565 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 277 IPR000504 GO:0003723
Mal2g1568 565 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 395 489 IPR029123 -
Mal2g1568 565 Gene3D - 298 393 IPR012677 -
Mal2g1568 565 MobiDBLite consensus disorder prediction 1 199 - -
Mal2g1568 565 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 563 - -
Mal2g1568 565 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 380 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1568 Mal-Chr2 18848936 18856293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1568 301 375 Eukaryotic Initiation Factors Gene Family AT4G34110 38.158 9.89e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1568 K13091 - gmx:100802446 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g4689 7 115044922 115051576 Mal2g1568 2 18848936 18856293 ECH
Mal2g1568 2 18848936 18856293 Mal2g1568 2 18848936 18856293 ECH
Mal7g4689 7 115044922 115051576 Mal2g1568 2 18848936 18856293 PCT