Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1532 ATGGTTAGAGAAAGAGTTGTTGATCTATGCATCACTGTTCCCACTTTCTTCAAATGCCCAATCTCACTCGACGTTATGAAATCACCTGTTAGTCTCTGCACCGGTGTCACCTACGACCGTTCCAGCATCCAACGCTGGTTAGACGACGGTAACAACACGTGTCCCGCCACCATGCAGATTCTTCACACTAAGGATTTCGTTCCTAACCGTACTCTACATAGTCTCATCCAGATCTGGACCGACTCGGTTCATCACCGGGTTGAACCGGTCGTTTCACCTTCACTTCCTTCAAATGAACAACTCCTTCAAGCAATCAAAGACTTAAACGACTCTAACGGTTTAAACCGGTTCGGTTTAATCACGAAAGTGATTCGTTTCGCTCAAGATTCCGATCAGAATCGTGTTTTTCTCACGAAATTAGACGGTTTCGTTCCGTTAATGGTTAGTTTTCTCGATAACAATGTCGACGGAAGTGTTGAATTTCTAGAACAGATTTTAACGGTGTTAGGTTTGATTCTGGAAAAAATTGAAGATCGTGAAGGATTGAAAAACGATGTGTTGAAAGGAAAGAACAAAAAATGCTTGGATTCAATGGTTCTCGTTTTACAAAAAGGAAGCAACAATTCAAGAATCGCAACCGCTAGGGTTTTGAAATTCATCGCTATAGACGGTGAATCAGAGCTTCTAATAGCTGAGAATGAATCTCTGATAACCGAATTACTGAATTTATCTTCGCCGGAGAATGATTCGAAGCTGATTGAAAATTGCTTATCGTGTTTAATAGCAATCTCAAAACCGAAACGGAACAAAATGAAACTGGTGAAAATTGGAGTAATGAAGACGTTGAAGAAATTACTAACGGAGTCTAATACGAGCGTGACGGTGACGGTGCTGGAGAAGGCGTTGAAGCTGATTGAAACGGCGTCGTCGACTAGTGAAGGAAGAAGAGAGATGTGTGAAAACGCGGCGTTTGTGGCGGCGATACTGAATAAGATTCGGAATGTATCGAACGTAGCGACGGAGCACGCCGTAACGACGCTGTGGAGTGTGTGTTATCTTTTTCGCGATCAGAAAGCACAAGAAGCGGTTACTATGGCGAATGGATTAACGAAGATTTTATTGCTAATACAGAGTAATTGTTCTCCTCAAGTTCGACAAATGTGTACGGATTTGCTTAAGATTTTTCGGGTTAATTCTAAATCGTGTCTTTCTTCTTATGATACCAAGACTTCACATATTATGCCGTTTTGA 1251 0.4173 MVRERVVDLCITVPTFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQILHTKDFVPNRTLHSLIQIWTDSVHHRVEPVVSPSLPSNEQLLQAIKDLNDSNGLNRFGLITKVIRFAQDSDQNRVFLTKLDGFVPLMVSFLDNNVDGSVEFLEQILTVLGLILEKIEDREGLKNDVLKGKNKKCLDSMVLVLQKGSNNSRIATARVLKFIAIDGESELLIAENESLITELLNLSSPENDSKLIENCLSCLIAISKPKRNKMKLVKIGVMKTLKKLLTESNTSVTVTVLEKALKLIETASSTSEGRREMCENAAFVAAILNKIRNVSNVATEHAVTTLWSVCYLFRDQKAQEAVTMANGLTKILLLIQSNCSPQVRQMCTDLLKIFRVNSKSCLSSYDTKTSHIMPF* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1532 416 CDD RING-Ubox_PUB 17 59 IPR045210 -
Mal2g1532 416 ProSiteProfiles U-box domain profile. 12 86 IPR003613 GO:0004842|GO:0016567
Mal2g1532 416 PANTHER WDSAM1 PROTEIN 8 416 IPR045185 GO:0061630
Mal2g1532 416 SUPERFAMILY ARM repeat 105 398 IPR016024 -
Mal2g1532 416 Gene3D - 296 395 IPR011989 -
Mal2g1532 416 Gene3D - 187 295 IPR011989 -
Mal2g1532 416 SMART Ubox_2 16 79 IPR003613 GO:0004842|GO:0016567
Mal2g1532 416 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 8 416 - -
Mal2g1532 416 SUPERFAMILY RING/U-box 11 82 - -
Mal2g1532 416 Pfam U-box domain 13 81 IPR003613 GO:0004842|GO:0016567
Mal2g1532 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 86 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1532 Mal-Chr2 18389673 18390923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1532 8 416 U-box Gene Family AT5G64660 52.619 8.33e-139 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1532 - - gmx:100799627 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g1532 2 18389673 18390923 Mal2g1532 2 18389673 18390923 ECH
Mal2g1532 2 18389673 18390923 Mal7g4719 7 115433575 115434828 ECH
Mal7g4719 7 115433575 115434828 Mal2g1532 2 18389673 18390923 PCT