Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1527 ATGGCTCCGGCGACAGCTCCGTCGTCCCCATCGCCGTCTTCTGTGAAGATATCCAGCTTCCTCCACCGTACGCATGCAACGCACAAAATTCAAAAGAAGCTGTCAAGCTCCTCCTCGTCGCCGGTGAAGCTGTCAAGCTCCTCCTCGTCGGAGTCGGAGTCGGAGTCGCCGGTGTTGAAGTTAATGTCGCTGGTTGATGTATATAAGAAGGCAAAGTATACGGTGGTTGAGAAGGAGGATTACGGTGACCTCCTCTGTGAACAATGTGGGTCCGGTGAACAACCGGAGGAGCTGCTTTTATGTGACATATGTGATAATGGTTTTCATATGAAATGTGTGAGACCGATTGTTGTGAGAGTTCCGATTGGTTCCTGGATTTGCCCTAAGTGTTCTGGGAAGAAGCTGAAGAAAGTGAAAAAGTTTTCTCAGAAGAAAATTCTGGATTTCTTCGGGCTTCGAAGGGATTGTGTTGATTTCAGGAACAATGGTGCTTCTTCTCAGGATGCTATAAAGCGTCGGAGACGTCCAAGACCTCTGGTGGTACAGAAGAAAAGGAGAAGACTTTTACCATTTGTTCCTACAGAAGATCCTGATAGGAGACTAAAACAAATGGCTTCCCTTGCTTCCGCTTTAACAGCATTGCATATGCAATTCAGTAATCGCCTGACGTACTTTCCAGGAATGGCTCCTAAATCTGCTAATAAATCCATTTTAGAGAATGGTGGCATGCAGGCTCTTCCTAAGGAAGATAAAGAGACCTTAAAACGCTGCATAGCTATGACTAAACGAGGCCAATTCCCTCCCTTAATGGTCGTTTATGATTCATGTCAAGGCTATACTGTGGAGGCTGATGGCCCAATCAAAGATATGACATTTATTGCTGAATACACTGGCGATGTTGATTATATAAAGAAGAGAGAATTTGATGATTGTGACAGTATGATGACGCTGCTTCTTGCAGCAGAAGCTGCTGACAGTCTTGTTATCTGTGCTGATAAACGTGGAAACATTGCTCGCTTCATCAGTGGCATCAACAATCATACTCAGGAAGGTAGGAAGAAGCAGAACTGTAAATGTGTGAGATATGATGTTAATGGTGAATGCCGTGTCTTATTGGTTGCTACTCGAGATATTTCCAAGGGGGAGAGGCTTTATTATGATTATAATGGTTATGTGCATGAATACCCAACTCATCATTTTGTCTGA 1206 0.442 MAPATAPSSPSPSSVKISSFLHRTHATHKIQKKLSSSSSSPVKLSSSSSSESESESPVLKLMSLVDVYKKAKYTVVEKEDYGDLLCEQCGSGEQPEELLLCDICDNGFHMKCVRPIVVRVPIGSWICPKCSGKKLKKVKKFSQKKILDFFGLRRDCVDFRNNGASSQDAIKRRRRPRPLVVQKKRRRLLPFVPTEDPDRRLKQMASLASALTALHMQFSNRLTYFPGMAPKSANKSILENGGMQALPKEDKETLKRCIAMTKRGQFPPLMVVYDSCQGYTVEADGPIKDMTFIAEYTGDVDYIKKREFDDCDSMMTLLLAAEAADSLVICADKRGNIARFISGINNHTQEGRKKQNCKCVRYDVNGECRVLLVATRDISKGERLYYDYNGYVHEYPTHHFV* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1527 401 SMART PHD_3 85 131 IPR001965 -
Mal2g1527 401 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 31 399 - -
Mal2g1527 401 Pfam SET domain 314 389 IPR001214 GO:0005515
Mal2g1527 401 SUPERFAMILY FYVE/PHD zinc finger 56 136 IPR011011 -
Mal2g1527 401 ProSitePatterns Zinc finger PHD-type signature. 86 130 IPR019786 -
Mal2g1527 401 MobiDBLite consensus disorder prediction 27 52 - -
Mal2g1527 401 ProSiteProfiles SET domain profile. 267 389 IPR001214 GO:0005515
Mal2g1527 401 MobiDBLite consensus disorder prediction 31 52 - -
Mal2g1527 401 ProSiteProfiles Zinc finger PHD-type profile. 83 133 IPR019787 -
Mal2g1527 401 SUPERFAMILY SET domain 260 389 IPR046341 -
Mal2g1527 401 Pfam PHD-finger 86 131 IPR019787 -
Mal2g1527 401 CDD SET_ATXR5_6-like 264 401 - -
Mal2g1527 401 CDD PHD_RSF1 85 130 - -
Mal2g1527 401 Gene3D SET domain 173 401 IPR046341 -
Mal2g1527 401 PANTHER HISTONE ACETYLTRANSFERASE 31 399 - -
Mal2g1527 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 145 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1527 Mal-Chr2 18285531 18289418 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1527 78 130 C2H2 Transcription Factor Family AT3G01460 37.736 2.69e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal2g1527 SET 9.7e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g1527 2 18285531 18289418 Mal2g1527 2 18285531 18289418 ECH