Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1374 ATGAATTTTGCACAACTCAACGACTCTCCCATGTTTCGTCAACAGCTTCAGGGTTTGGAAGAAAGTACAGAATCGTTACGCTCAAGATGTTGGAAATTCTACAAAGGATGTAGAAAGTACACGGAAGGGCTTGGAGTGGCATATGATGGAGACATTGCCTTTGCAACTGCCCTTGAAAATTTTGGAGGAGGGCATAGTGATCCTCTTTTTGTTACTTTGGGAGGACCTGTAATGACCAAATTCGCTATTGCTTTGAGAGAAATCAGTACACACAAGGAACTTCTTCGGTCACAGGTGGAGCATATGCTAAATGACCGGTTACTGAACATCCTTAATGTTGAAATTCTTGATGTCAAGGAAGCTCGGAGGCGTTTTGATAAAGCTTCCCAAGTATATGATCAGGCACGTGAGAAGTTTATGTCATTGAGAAAAAGCACCAAGTTTGATGTCGCCGCTGTCATAGAAGAGGAATTGCACAATGCAAGAACAATATTCGAGGAAGCTCGTTTCAATCTGGTTGGTGCTCTTCATAATATTGAGGCCAAGAAGAGATTTGAGTTTCTGGAGGCTGTCACTGGAGTCATGGACGCTCATCTTCGATACTTTCAACAGGGATATCAGCAGTTACAGGAGCTGGAGCCTTTCATTATTGAGGTTTTGGCTTATGCACAAAAAGCAAGAGAAAGTTACAATGAGGAGCAGATTTCTCTTTGTGAAAGAATGGTAGAGTACAAAAAACTAAGTTATCAAGAAAGTAGGTTGTCTTTGAATGGACCTTATGGTTCTCCCAGTGGAGAAAGTGTGAATATACATCCTTTTTCTAGGATATCAAATAGTGTGGTAGATGCAGTAGCTGAGTCAGCTGCAAGTGGAAAGGTTCGAGTCATTCGACAGGGGTATCTTTCAAAACGTTCATCGAATTTGAGGGGTGACTGGAAGAGAAGATTTTTTGTTCTTGATAGTCGTGGAATGCTTTACTACTATCGTAAACCATTACATGCAAATAGTCTCAATCAGCAATCTTCACAGAGGAATTGTGCCAATGAAAACAGTGCAGGCATTCTGAGTAGGTTGCTGTCTTCAAATTACCATGGAGTTGTTCCTGATGAAAAATCTGTAGCACGCCACACAGTGAACCTGCTCACATCAACAATCAAGGTTGATGCTGAGCAAACAGATTTAAGGTTCTGCTTTAGGATTATTTCACCCTCAAAGATGTATACTTTGCAGGCAGAAAATGCCCTTGACCAGATGGATTGGATGGAAAAGATAAATGGAGTCATTGCCTCCTTATTGTCGGTACAGTCACTAGGTGGAAAGTCTTTCTCAGCTGACTCAGAAAGTGGTGACAGCGACACTTCCAGCAACATCGACTCATTACCAAGTTTACAAGATTATGATCGATTAGTGAGTGGGGATTTTGCATCGAAGAACTCCAACCTTAATAAACCATCTGAAGACTTACAAAAGAATAAGCAGAGTATAAAAGTTGAACAGCCAATTGATATTCTAAGAAAGGTTAGCGGTAATGACAAATGTGCCGATTGCGGTAAACCTGAGCCAGACTGGGCATCCTTAAACCTTGGCATCCTCGTATGCATTGAATGTTCCGGCGTTCACCGTAATCTTGGTGTACATAAATCAAAAGTAAGATCACTGAAACTTGATGTCAAAGTGTGGGATTCCTCCGTCTTAACTATGTTTCAGTCACTGGGAAATCTCTTTGCGAACTCGGTTTGGGAGGAGCTTTTGCATACAAGTATTTCACATATTGATGACACTCCTTTTGGTTCATCCAAAGCTGATAAAAACAAGTTAGGTCATGCAAAAAAACCAGAACATGATGATCTTATTTCACTAAAGGAAAGATTCATTCATGCAAAGTATTCCGAGAAAGTATTTGTTCGACGGATGCCAAAAAGCCATCATCTTCTTTCAGTGGCGCAACAAGTGATGGAATGCATCTATGCCAACGACAAGAAAGCAGTGTACCGGCACATTGTCAAATCAGACGTGGACATCAATTCTGTTAGTCGAGAAGCACTATCTGGCTTTTTTTCTAATATGTCTTCTTCAAGTGACTCAAATATATCTTCAAGTAAAGTTCAGCTAATGGAGGACATACAAGAGGGTTCTAGCGTGCTTCACTTGGCATGCCTAACAAGTGATGCTGGAATGGTAGAGCTTCTCCTACAGTATGGAGCAGATGTAAATGCTATTGATTCAAGAGGCAGGACACCACTGCATTACTGCATTATGAGAGGGAAGACTGCAGCTGCAAAATTGCTTATTACAAGGGGTGCCAATCCACTTGCTGTAGATAAAGAAGGCAACACTCCTCTTATGCTTGCACCAGAACCTGCTGTTGACATTCCCACAAAACTTACCATTAACAAAATCCATGCCTCATTTCTAGAGAAAATTGAGGACCAACCAACAAGTCATTCGGATGTACAAAAAAAAAACACTTTTTTGTTGGGAGCCTGGAACTGGTGGGTTGGTTTTGTTGGGCCACATGTTTGTGGATATCATCTTTTGTTGTAA 2544 0.4112 MNFAQLNDSPMFRQQLQGLEESTESLRSRCWKFYKGCRKYTEGLGVAYDGDIAFATALENFGGGHSDPLFVTLGGPVMTKFAIALREISTHKELLRSQVEHMLNDRLLNILNVEILDVKEARRRFDKASQVYDQAREKFMSLRKSTKFDVAAVIEEELHNARTIFEEARFNLVGALHNIEAKKRFEFLEAVTGVMDAHLRYFQQGYQQLQELEPFIIEVLAYAQKARESYNEEQISLCERMVEYKKLSYQESRLSLNGPYGSPSGESVNIHPFSRISNSVVDAVAESAASGKVRVIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKPLHANSLNQQSSQRNCANENSAGILSRLLSSNYHGVVPDEKSVARHTVNLLTSTIKVDAEQTDLRFCFRIISPSKMYTLQAENALDQMDWMEKINGVIASLLSVQSLGGKSFSADSESGDSDTSSNIDSLPSLQDYDRLVSGDFASKNSNLNKPSEDLQKNKQSIKVEQPIDILRKVSGNDKCADCGKPEPDWASLNLGILVCIECSGVHRNLGVHKSKVRSLKLDVKVWDSSVLTMFQSLGNLFANSVWEELLHTSISHIDDTPFGSSKADKNKLGHAKKPEHDDLISLKERFIHAKYSEKVFVRRMPKSHHLLSVAQQVMECIYANDKKAVYRHIVKSDVDINSVSREALSGFFSNMSSSSDSNISSSKVQLMEDIQEGSSVLHLACLTSDAGMVELLLQYGADVNAIDSRGRTPLHYCIMRGKTAAAKLLITRGANPLAVDKEGNTPLMLAPEPAVDIPTKLTINKIHASFLEKIEDQPTSHSDVQKKNTFLLGAWNWWVGFVGPHVCGYHLLL* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1374 847 CDD BAR_SFC_plant 15 215 IPR035670 -
Mal2g1374 847 PRINTS HIV Rev interacting protein signature 510 529 IPR001164 GO:0005096
Mal2g1374 847 PRINTS HIV Rev interacting protein signature 529 546 IPR001164 GO:0005096
Mal2g1374 847 PRINTS HIV Rev interacting protein signature 552 573 IPR001164 GO:0005096
Mal2g1374 847 SMART PH_update 295 431 IPR001849 -
Mal2g1374 847 Pfam BAR domain of APPL family 6 233 - -
Mal2g1374 847 SUPERFAMILY ArfGap/RecO-like zinc finger 498 638 IPR037278 -
Mal2g1374 847 Pfam Putative GTPase activating protein for Arf 501 636 IPR001164 GO:0005096
Mal2g1374 847 ProSiteProfiles PH domain profile. 294 429 IPR001849 -
Mal2g1374 847 Pfam Ankyrin repeats (3 copies) 715 784 IPR002110 GO:0005515
Mal2g1374 847 PANTHER CENTAURIN/ARF 1 798 IPR045258 GO:0005096
Mal2g1374 847 SMART arf_gap_3 498 642 IPR001164 GO:0005096
Mal2g1374 847 ProSiteProfiles Ankyrin repeat profile. 743 775 IPR002110 GO:0005515
Mal2g1374 847 ProSiteProfiles Ankyrin repeat region circular profile. 710 741 - -
Mal2g1374 847 CDD ArfGap 501 629 - -
Mal2g1374 847 Coils Coil 118 138 - -
Mal2g1374 847 ProSiteProfiles Ankyrin repeat region circular profile. 743 769 - -
Mal2g1374 847 SUPERFAMILY Ankyrin repeat 660 784 IPR036770 -
Mal2g1374 847 Gene3D - 687 800 IPR036770 -
Mal2g1374 847 SMART ANK_2a 710 739 IPR002110 GO:0005515
Mal2g1374 847 SMART ANK_2a 743 772 IPR002110 GO:0005515
Mal2g1374 847 SMART 5bar 2 218 IPR004148 GO:0005515|GO:0005737
Mal2g1374 847 CDD PH_ACAP 297 433 - -
Mal2g1374 847 Gene3D Arfaptin homology (AH) domain/BAR domain 4 250 IPR027267 -
Mal2g1374 847 SUPERFAMILY PH domain-like 207 428 - -
Mal2g1374 847 ProSiteProfiles ARF GTPase-activating proteins domain profile. 498 642 IPR001164 GO:0005096
Mal2g1374 847 ProSiteProfiles Ankyrin repeat profile. 710 742 IPR002110 GO:0005515
Mal2g1374 847 SUPERFAMILY BAR/IMD domain-like 6 317 IPR027267 -
Mal2g1374 847 Pfam PH domain 295 428 IPR001849 -
Mal2g1374 847 Gene3D Arf GTPase activating protein 478 642 IPR038508 -
Mal2g1374 847 Gene3D - 287 438 IPR011993 -
Mal2g1374 847 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1374 Mal-Chr2 16516347 16523867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1374 502 636 C2H2 Transcription Factor Family AT4G21160 39.706 4.91e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1374 K12489 - gmx:100797073 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g1374 2 16516347 16523867 Mal2g1374 2 16516347 16523867 ECH
Mal7g4846 7 116950279 116959892 Mal2g1374 2 16516347 16523867 PCT