Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1283 ATGTACAACTCTATGAACATGTCGGAGCAGATCAACAAGACCAACGAAGACGCTGACAACAACAACAACAACAATCACATCCATTTCGATTCACCTACCCTCGAAGACGCTTCGGCCGAAGGAGATGTTTCCCTCGAAGATGTTTATGTTTCCGGTGATGGAAATCACGCTGATATGTCTATTCAACGATTCGATGATTCTAGCCAGCTCACACTTTCGTTTCGTGGCCAAGTTTATGTCTTTGATTCTGTTACCCCTGAAAAGGTTCAATCCGTTTTGTTACTGTTAGGAGGATGTGAATTAAATTCGGGTTCGCAATGTTTGGACACATCGCCTCTAAATCAGAGGAGTGGTGCTGAATTTCCTACAAGATGTAGTCAGCCACAGCGAGCAGCATCGTTGATTAGGTTTCGTCAGAAGAGGAAAGAGCGAAACTTTGATAAGAAAGTTAGATATGAAGTACGTCAAGAAGTTGCACTAAGGATGCAACGTAGTAAGGGTCAATTTACATCAGCTAAGAAACAAGATGGAGGTAACAGTTGGGGTTCTGATCCAGAGTCAGGGCAAGATGTGGTTCAGTCAGAAACCTCATGCACGCACTGTGGAATCAGTTCAAAATCCACCCCCATGATGCGAAGGGGGCCATCTGGCCCTAGGACACTTTGCAATGCTTGTGGACTTTTTTGGGCGAATAGGGGTACTTTAAGGGATCTATCTACTTCTAGGAGAAATCACGAACACACTCTTCCGCCACCTGAGCAGAGTACTTTGAGGGATCTATCTAATTCTAAGAGAAACCACGAACCGCACCCTCTTCCACCACCTGAGCAGGTTGGCGACGGTAATGACTTGAACTGTGGGACTGCTCCTGCGCATAACGATTCTGTTGATGATAAACCAGCTTTGGTATCCGATCAATGA 921 0.4528 MYNSMNMSEQINKTNEDADNNNNNNHIHFDSPTLEDASAEGDVSLEDVYVSGDGNHADMSIQRFDDSSQLTLSFRGQVYVFDSVTPEKVQSVLLLLGGCELNSGSQCLDTSPLNQRSGAEFPTRCSQPQRAASLIRFRQKRKERNFDKKVRYEVRQEVALRMQRSKGQFTSAKKQDGGNSWGSDPESGQDVVQSETSCTHCGISSKSTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSTSRRNHEHTLPPPEQSTLRDLSNSKRNHEPHPLPPPEQVGDGNDLNCGTAPAHNDSVDDKPALVSDQ* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1283 306 Gene3D - 189 248 IPR013088 GO:0006355|GO:0008270
Mal2g1283 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 195 249 - -
Mal2g1283 306 MobiDBLite consensus disorder prediction 241 306 - -
Mal2g1283 306 MobiDBLite consensus disorder prediction 14 31 - -
Mal2g1283 306 MobiDBLite consensus disorder prediction 14 37 - -
Mal2g1283 306 Pfam GATA zinc finger 198 234 IPR000679 GO:0006355|GO:0043565
Mal2g1283 306 CDD ZnF_GATA 197 239 IPR000679 GO:0006355|GO:0043565
Mal2g1283 306 SMART tify_2 63 98 IPR010399 -
Mal2g1283 306 MobiDBLite consensus disorder prediction 164 193 - -
Mal2g1283 306 Pfam tify domain 67 97 IPR010399 -
Mal2g1283 306 Pfam CCT motif 130 172 IPR010402 GO:0005515
Mal2g1283 306 PANTHER GATA TRANSCRIPTION FACTOR 25 12 265 - -
Mal2g1283 306 PANTHER GATA TRANSCRIPTION FACTOR 28 12 265 IPR045280 GO:0006355
Mal2g1283 306 ProSiteProfiles GATA-type zinc finger domain profile. 192 243 IPR000679 GO:0006355|GO:0043565
Mal2g1283 306 ProSiteProfiles Tify domain profile. 63 98 IPR010399 -
Mal2g1283 306 ProSitePatterns GATA-type zinc finger domain. 198 225 IPR000679 GO:0006355|GO:0043565
Mal2g1283 306 ProSiteProfiles CCT domain profile. 130 172 IPR010402 GO:0005515
Mal2g1283 306 SMART GATA_3 192 245 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1283 Mal-Chr2 15412931 15418018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1283 67 255 Tify Gene Family AT4G24470 62.304 8.66e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal2g1283 CCT 9.7e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1283 - - pvu:PHAVU_008G182900g 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g1283 2 15412931 15418018 Mal2g1283 2 15412931 15418018 ECH
Mal8g2243 8 48546295 48552746 Mal2g1283 2 15412931 15418018 PCT