Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1252 ATGCTAACACACAACCACTGCCATCACATGGCTCCTTCATCTTCTTCTTCATTCTTCAACACTCTCACTCTATTCTTATTCTTCTTATTACTATTACAACAACACTTCCTTACCGTTGCTGTTGCATTTACAGAACCTAGTCCACCCCCAGCTCCCATTCCCGAAGACGCAGCAACTACCATTGCTCAACACACCTTCACACCATTCAAACCAAGCGTAGCTATTGTTATTGGCGTTTTCACTATCCTCTTCTCTCTCACTTTTCTCCTTCTTCTCTACATCAAACACATCAACAGCAGCGGCGAGACAATCAACATCGACAGTAGCAGCAGCGGCGGAGGAATCTCGTCTTTCAGCGGCGGAAGAAAAAACTCCGGCATAGACCGTTCGGTAGTTGAATCGTTACCGATTTTCAGATTCGGATCACTTAGAGGCCAAAAGGAAGGTCTAGATTGCGCAGTTTGTCTTTCGAAATTTGAATCCTCTGAAGTTTTACGGTTATTGCCGAAATGCAAACACGCTTTTCATGTGGAATGTGTTGATACATGGTTGGATGCACATTCAACTTGTCCTCTTTGCCGTTGCAGAGTTGATCCTGAAGACATTCTTCTCGTAGTGGAAGATTCATCATCATCATCATCAAGAAAATCACACCAGAAGATTCAGAATCAAACAGAAGAAAATGATCGTGAATGTGTGGTTGAGATTGAAAGAGGAACAATGATGAGAAATGAGATTGCAGAGTATTATCGAAAGAGGCATTCATCGGTAGGGGAAAAGGAATGGGAACGAGAACGAGAAAGAAAGAAAACGGCGTCGTTTAGATGGTCAATGGATAGTTCTAGAAAGAAGAATGATAATTCTGTTGGGCTTGGGCTTGGTTGTTTTGTTGGGTCGGGGCCCAGAAAAGACGGAATGTTGTTAACGAAAGAAGAGACGGAGACGGAGACGGAGAGGAGGAGTAGCGTGGAACGGAGGAGAAGGTTGGAGCATCGGATTATTTTTTCGCCTTCGGTTACGAGCATAAGGAGTGGGCTCCACCGAAATCAACGGTGGAGTGATGTACAACCGTGTGATCTGTTGTATCTAACTTCAGAGATGATGATAATGAGTGAGTCACGGAGAGTGAAAAATAATGATAGTTGTTGGAATAGCAGAGGTGTAATTAATGAGAGAAGTGTGTCTGAAATCACGGGATTCACCAGGTTCCAAACCAGCAACACAAAGAAATAA 1233 0.4347 MLTHNHCHHMAPSSSSSFFNTLTLFLFFLLLLQQHFLTVAVAFTEPSPPPAPIPEDAATTIAQHTFTPFKPSVAIVIGVFTILFSLTFLLLLYIKHINSSGETINIDSSSSGGGISSFSGGRKNSGIDRSVVESLPIFRFGSLRGQKEGLDCAVCLSKFESSEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRCRVDPEDILLVVEDSSSSSSRKSHQKIQNQTEENDRECVVEIERGTMMRNEIAEYYRKRHSSVGEKEWERERERKKTASFRWSMDSSRKKNDNSVGLGLGCFVGSGPRKDGMLLTKEETETETERRSSVERRRRLEHRIIFSPSVTSIRSGLHRNQRWSDVQPCDLLYLTSEMMIMSESRRVKNNDSCWNSRGVINERSVSEITGFTRFQTSNTKK* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1252 410 CDD RING-H2_EL5_like 151 194 - -
Mal2g1252 410 PANTHER RING-H2 FINGER PROTEIN ATL43 47 409 - -
Mal2g1252 410 SUPERFAMILY RING/U-box 134 199 - -
Mal2g1252 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 201 IPR013083 -
Mal2g1252 410 SMART ring_2 152 193 IPR001841 -
Mal2g1252 410 MobiDBLite consensus disorder prediction 208 228 - -
Mal2g1252 410 Pfam Ring finger domain 151 194 IPR001841 -
Mal2g1252 410 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 47 409 - -
Mal2g1252 410 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1252 Mal-Chr2 14993732 14994964 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1252 63 402 C3H Transcription Factor Family AT5G05810 45.000 3.26e-71 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1252 K19041 - gmx:100794083 286.574