Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1164 ATGGAGGCCGTTAGTTCTATGAATGACCTATGGCTATGGGATTGCTTATCTGACATAGGTGATGACAAACCTAACAAAGCCTTTCCTTCACTTAATCCATTGGACCTGGGTGATCCCAACTATTCATTTTCTGAGTTTGCAGAAGAGGAGCTTGAATGGATATCCAACAAAGATGCATTTCCAGCTGTTGAAACATTTGTTGACTTGTCTTGTATTCAACCGGATATTTCGAAATATCAAAAGATAGCACCAATGCTCGAGAACAGCACAAGCAGTAGCAACAACAATAACAGTTCCAACAGCATTACCCTCTTAAGTGGCTACAATCACATGAAGTTCCCTGTCCGTGCACGGAGCAAGTCTCGTAGTAAGCCTCGCCTTGGCATTTCTGACACCTGGAAACATCAATTCGCGTGGAAACAACCAAGTAACAAAACTTCCAAAGAACAAGCGAAACAAACCTCAACCATTGGGAGGAAATGTCATCATTGTGGAGCGGATAATACTCCGCAATGGCGGTCAGGTCCCAATGGCCCAAAAACACTTTGTAATGCATGTGGGGTTAGGCATAGATCTGGCCGACTTGTACCTGAATACCGCCCTGCAAATAGCCCAACTTTTTGCAGCGACGTGCATTCTAATTCCCACAGGAAAGTAGTGGAAATGAGGAAGCAGAAGGGAATGGGAATGAGTTGA 696 0.4425 MEAVSSMNDLWLWDCLSDIGDDKPNKAFPSLNPLDLGDPNYSFSEFAEEELEWISNKDAFPAVETFVDLSCIQPDISKYQKIAPMLENSTSSSNNNNSSNSITLLSGYNHMKFPVRARSKSRSKPRLGISDTWKHQFAWKQPSNKTSKEQAKQTSTIGRKCHHCGADNTPQWRSGPNGPKTLCNACGVRHRSGRLVPEYRPANSPTFCSDVHSNSHRKVVEMRKQKGMGMS* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1164 231 PANTHER GATA TRANSCRIPTION FACTOR 1 44 226 - -
Mal2g1164 231 CDD ZnF_GATA 160 207 IPR000679 GO:0006355|GO:0043565
Mal2g1164 231 SMART GATA_3 155 205 IPR000679 GO:0006355|GO:0043565
Mal2g1164 231 Gene3D - 154 206 IPR013088 GO:0006355|GO:0008270
Mal2g1164 231 ProSiteProfiles GATA-type zinc finger domain profile. 155 191 IPR000679 GO:0006355|GO:0043565
Mal2g1164 231 ProSitePatterns GATA-type zinc finger domain. 161 186 IPR000679 GO:0006355|GO:0043565
Mal2g1164 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 157 218 - -
Mal2g1164 231 Pfam GATA zinc finger 161 194 IPR000679 GO:0006355|GO:0043565
Mal2g1164 231 PANTHER GATA TRANSCRIPTION FACTOR 44 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1164 Mal-Chr2 13674517 13675593 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1164 23 225 C2C2-Gata Transcription Factor Family AT3G24050 43.220 1.56e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal2g1164 GATA 8.8e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1164 - - mtr:MTR_5g007600 360.147