Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1158 ATGGGGAGAGTTAAGCTTCAGATCAAAAAGATTGAGAACATAACAAATAGACAAGTCACTTTCTCAAAGAGAAGGAATGGTTTAATCAAGAAAGCTTATGAACTTTCTGTTCTATGTGATGTTGATGTTGGTCTCATCATGTTTTCTCCATCTGGGAGAGCCACACTCTTCTCTGGCAATAGAAGCATTGAAGAAATCCTCGAACGATATATAAATCTTCCAGACAGTGAACGTGGAAGGATGCATAACCAAGAGCACATTCGAAAGGTGCTTAGAAAGTTGAAAGCTGAAACTGATCAGATATGCCAAACTCCTAGCTCTATGATTCCAGACTTCCAACTCAAGGAGGTTCAAAGAGAAATATTTATTTGCAAGTCTCAATTGGAAGAGATGGAGAATCGACTAAGGATATTTGAAGGAGATCCTTCTGAGATTACAACATTGTGTGAGGCGGAATATCGTGAACAAGTCCTACAGGAAACTCTAAAACAAGTGCAACTGCAAAAAGTAAGTTTTATAAAATACAAGATAACACTATACACATGA 546 0.3755 MGRVKLQIKKIENITNRQVTFSKRRNGLIKKAYELSVLCDVDVGLIMFSPSGRATLFSGNRSIEEILERYINLPDSERGRMHNQEHIRKVLRKLKAETDQICQTPSSMIPDFQLKEVQREIFICKSQLEEMENRLRIFEGDPSEITTLCEAEYREQVLQETLKQVQLQKVSFIKYKITLYT* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1158 181 Coils Coil 114 134 - -
Mal2g1158 181 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Mal2g1158 181 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 174 - -
Mal2g1158 181 PANTHER MADS BOX PROTEIN 1 174 - -
Mal2g1158 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal2g1158 181 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Mal2g1158 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal2g1158 181 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Mal2g1158 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 55 IPR002100 GO:0003677|GO:0046983
Mal2g1158 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal2g1158 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal2g1158 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1158 Mal-Chr2 13586774 13588225 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1158 1 165 Type I MADS-box Gene Family AT1G77980 48.023 4.27e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal2g1158 SRF-TF 4.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1158 - - mtr:MTR_3g102570 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g1158 2 13586774 13588225 Mal2g1158 2 13586774 13588225 ECH