Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1095 ATGAATTTCAAAATGGATTCTGATAAAGCAAAGCTCTTCGTCGGTGGCATTTCTCGCAACACAACCGAAGATACTCTCAAATACAACTTCACCAAATACGGTGACGTTTTGCATTACACCATCTCTTTTGACCGCACCACCCGAATCCCTAGAGGTTTTGGTTTCGTTACTTTCTCCGATATTGCTTCAGCTCACAACGCCCTTCAAGATACCCATGTTATTCTTGGACGAAAGATTTTTGTAGGAGGTTTACCTGCTAATATGTCTGTGGAGGAGTTTAAGCGGTACTTTGAGAGGTTTTGTCGAATAACTGATGTAGTGGTGATGCAGGATAGTGTAACTCATAGGCCAAGGGGGTTTGGGTTTATTACCTTAGATTCTGAAGACTCTGTGCAAAGTGTTATGATGAGAAGTTTTCATGACTTGAATGGTAGGCAGGTGGAGGTTAAGAGGGCTGTTCCGAGGGAGGGGAATGCTGGTATGATGGTAGTAGCTACTGAAGTTTTTCCTCATTCTAGTCCCGGGAACATGCTTCTTGCATTTGCTCCTTTACCTTTGTCTACTAGTGATGGTGTATATGGATACGGATCAAATCCCTATGGTTGTTGGTACCTGATGGATAGGTATGGGTACGGGGGGAATGGATATGCAGCTCCATCAGATGTTAATAGGAACTTATGGTATGGTGGGCAAATGGTGACTGGTCCTCAGGCATATCATCAGGTGCCTTATGCTAATGTTATGCCAAGTGTTGCTTATGTAGGTGGTAGTGTTGGAATAGTAGGTAGTGGTGCTGGAAATTGGGGGTACAGTTCCATTCTTGGGTCTGCAACAAATTATAAGTTTGACCAACCTTTTATTGCTAATGGATTTGTTCCATTCAATATGCCATCGCCTCATGGTGTAAAGCAGATTGTTGGTGCTTCAAGTTTTAAAGGAAGCAATGGTGAAATTTCTAGTTGA 963 0.4268 MNFKMDSDKAKLFVGGISRNTTEDTLKYNFTKYGDVLHYTISFDRTTRIPRGFGFVTFSDIASAHNALQDTHVILGRKIFVGGLPANMSVEEFKRYFERFCRITDVVVMQDSVTHRPRGFGFITLDSEDSVQSVMMRSFHDLNGRQVEVKRAVPREGNAGMMVVATEVFPHSSPGNMLLAFAPLPLSTSDGVYGYGSNPYGCWYLMDRYGYGGNGYAAPSDVNRNLWYGGQMVTGPQAYHQVPYANVMPSVAYVGGSVGIVGSGAGNWGYSSILGSATNYKFDQPFIANGFVPFNMPSPHGVKQIVGASSFKGSNGEISS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1095 320 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 77 309 - -
Mal2g1095 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 154 IPR000504 GO:0003723
Mal2g1095 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 81 IPR000504 GO:0003723
Mal2g1095 320 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 77 309 - -
Mal2g1095 320 SUPERFAMILY RNA-binding domain, RBD 77 164 IPR035979 GO:0003676
Mal2g1095 320 SUPERFAMILY RNA-binding domain, RBD 6 79 IPR035979 GO:0003676
Mal2g1095 320 Gene3D - 2 77 IPR012677 -
Mal2g1095 320 Gene3D - 78 161 IPR012677 -
Mal2g1095 320 SMART rrm1_1 78 150 IPR000504 GO:0003723
Mal2g1095 320 SMART rrm1_1 11 76 IPR000504 GO:0003723
Mal2g1095 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 78 IPR000504 GO:0003723
Mal2g1095 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 135 IPR000504 GO:0003723
Mal2g1095 320 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 79 - -
Mal2g1095 320 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1095 Mal-Chr2 12807992 12809331 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1095 7 137 Eukaryotic Initiation Factors Gene Family AT1G22760 23.418 2.41e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1095 K14411 - gmx:100816822 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g1095 2 12807992 12809331 Mal2g1095 2 12807992 12809331 ECH