Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0998 ATGGATGATTCAATCATGGATTCATCAAACGACAATGATGATCAGAACCAAACTAAAAATCTCAAGCGAAAATTCGATCACTTGTACGCAAAACCCAATGTCGATGAAGATTCTCCTTCTCAAGAACAAACCCTCATTGCCAACTTGGTTCCTAGAAGGGATCAGTTGGAGGCATTTGAAGTTGCAAAGAAGAGGAACACAATTGCAATTATGGATACAGGTTCTGGAAAAACATTGATAGCTATATTGCTTATCAAAGAAACTGGTCAAGCTATTAGGTCTAGTGGGGTTAAAAAATTGATTGTTTTCTTAGCTCCCACTGTTCACCTAGTGAATCAGCAATACAAGAATATAAAACTGAATACAGATTTACAAGTTGGGGAATACTATGGGTCTAAAGGAGTTGATACATGGAATTTGAAGAGCTGGCAGAAGGAAGTTAGTGAAAACGATGTAATGGTTATGACACCCCAGATTCTTTTGGATGCCTTCAGAAAAGCATTCTTGAGTATAGAAATGATATGCTTGATGGTTATTGATGAGTGTCATTGGGCATCAGGCAACCATCCCTATGCTAAAATAATGGCGGAGTTTTATCACCAAGCTAATGAAAAGCCAAAGATTTTTGGGATGACAGCATCACCGGTTGGTAAAAGAGGTGTTTCTTCTACTTTGGTTTGTGAGGGTCAGATATCAGACCTTGAAAACATCTTGGATTCTCAGAGTTACGTTGTTAAAGATCGGACAGAGATAGATGTATCTATCCCATCTGCAAAAGAGAGTTGTAGATTCTATGACCCAGCATGGTTTCATGCTTTGAGTTTGAAGCCAAAAATTGAAGCTTCGTGGTCGAAGTGTGATGTGTTGTTGTCAGAATTTCAAAGTAACTATAAGGATATGGACGATAAATTTAAGGCGCTACATCAGCGGATGTCCAATGAGCTTGCAAAAATTTTATATTGCCTCGAAGATCTTGGACTGTTGTGTGCTTATGAGGCAGCTAAAATCTGTCAAAGGAAATTCGCCAAAATTAACGCAGAATGTGAAATCTACAGAAAAGCCAATCTTCAGTGTGTTACTGTCATTGAAGAAGTAATCCAAATAATTGAAGAATCCCTCCATCTTGCCGATGAAATGATTTTGGATGCTCAATTTGATTGTTCAAAGGCAGTAGACATGGGATACATATCGCCAAAATTACTTGAACTTATTAAACTCTTCGAATCATTTGGAGAACCTAGTCAGTTATTGTGCCTCATTTTTGTTGAAAGAATCATTACAGCTAAGGTGATTGAAAGATTTGTGAAAAAAGTTTCCCAGATATCTCATCTCACAGTTGCCTATGTAACTGGAAGCAATACATCAGCTGATGCACTTGCTCGTAACAGGCAGAAAGAGATATTGGATTCTTTCCGATCCGGAAAGGTCAATCTTCTATTTACTACTGATGTACTTGAGGAAGGAATTCACGTGCCAAACTGCTCGTGTGTGATACGTTTTGACCTCCCCACGACAGTTTGTAGTTATATCCAATCTCGTGGAAGATCTAGACGTGCTAACTCCCAATTTATTTTGATGTTGGAGAGGGGAAATTTGAAGCAAAGAAATCAGCTCTTTGACATAATCAGGAGCGAGCGTTCCATGAATGATGCAGCTGTTAGTAAAGACCATGAATCTAATTTAAGGGCGTTTACTGTAAGGAAAACAGAATCATATTGTGTGGATTCTACTGGAGCATCAGTCACTTTAGACTCCAGTGTTAGTCTTATAAATCAATATTGCGAAAAGCTCCCACGAGATAAGTACTCCTCTGCAAAGCCCAATTTTGATTTGCTACCTATGGAGGGAGGAGGGCACGTGTGTAAATTAACATTACCGCCTAATGCAGCTTTCCAAACACTGGTTGGTCCTTCAGGAAAAGACGTTCGACATGCAAAGACTCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGCGCCTTAAATGACCATCTTGTTCCATTCATTGAAGATCCTTTAGAAGCAGACACTATTATAAAAAACAAGGAATCAAATTCAAGTGCAGGTGTAGGTGCAGGGACCACGAAGAGAAAGGAGTTACACGGCACAGCCAGCGTTCAGGCATTATGTGGTTCATGGGGTGACAAACTTGATGGAGCCAAATTTCATGCTTATAAATTTGAATTCAAATGTAATATTGTTTCTGAAATTTATTCTGGATTCGTTCTTCTGGTCGAGTCAAAGCTTGATGATGATGTAGGAAATTTAGAATTAGATTTGTATTTAATCTCAAAGATGGTGAAGACTTCTGTCATTTCATGTGGCCAAGTTGATTTGGATGCTGAACAGGTGACGAAAGCAAAAAGCTTCCACGAGCTTTTTTTCAATGGTTTATTCGGGAGATTGATTCGTAAGTCCACAACAGTCCAAGGGGAAAGGGAATTTTTACTGCAGAAAGACACAGAACTATTGTGGAGTCCAAAAAACTGGCGGAGATTTTCGTTGGTTGCGGAAGTTTCTGATGATAACAGCAAAATCATATCACCACCTTGTGATACCAGTTCATCATCGGATATGGAATGTGAAAGCACAAACATGTTTCACTTTGCCAATCGTGTTGTTGATGTTAGTAGTGTGAAAGATAATGTAGCTTTGGCCATTCATACTGGAAAAGTATATTGTATCATTGATGTAGTTGATAACTCATCTGCTGAAAGTCCTTTTGACGGTAACAACGACAAGTCTGGAGAAGACAAGATGACGTTCACGCAATATTTCCAGAAAAGGTATGGAATCACACTAAGACATCCAGAACAGCCTTTGTTAAGGTTGAAGCAAGGTCATAATGCACACAATCTTTTTTTGAACGTTCCCGAGGAAGATGGTGGGGACAAGTCAACACAAGTTGGCCCGGTAGCCCCAAAAGTTCCTGTACATGTTCACATTCCACCCGAGCTTCTTTGCCTTCTTGATGTTAAAAGAGATGTGTACAAGTCAATGTACTTGCTACCATCTCTTATGTACCGTATTGAATCTTTGATGTTATCCAGTCAGCTTAGAGCAGAGATAAATGATCACACAGACAATTTCAAGATACCTAGCTCTCTGATTTTAGAAGCACTTACAACTTTAAGATGCTGTGAAAAATTTTCTATGGAACGTCTTGAGTTACTAGGAGATTCTGTTTTGAAATATGCGGTGAGCTGTCATCTATTTCTTAAATTTCCTAAGAAACATGAAGGACACTTATCTGCCAAAAGACAATGGGCTGTTCGTAATTCAACACTACACAAGCTGGGAACAGATCGCAAATTACAGGGATATATTCGAGACTCCGCATTTGAACCTCGCCGTTGGATTGCTCCTGGACAAGACTGTATACACACAGTTCCTTGTGATTGTGGGTTGGAAACCTTAGAAGTGCCTTTAGATGTAAAGTTCCACACTGAAGATCCAAAAGTTGTGGTTGGAAAGTTGTGTGACAGGGGTCATCGCTGGATGTGCTCGAAGACTATTGCTGACTGTGTGGAAGCTCTGATAGGAGCGTACTATGTAGGTGGTGGACTGATTGCTTCACTTCACATGATGAAATGGCTTGGGATTGATTCGGGACTTGAACTGTCGATGGTTGATGAAGCCATTACCACTGCGTCTCTCCACACATACACGCCTAAAGTAAACGAGATTGCAAGCCTCGAGGCGAAAATTGGATATGAATTTTCGGTCAAGGGACTCTTAGTGGAGGCAACCACACATTTGTCTGAGACAGAACATGGAACTGGCTGCTGCTATGAGAGGCTTGAATTCCTTGGTGACTCAGTATTGGACCTGCTCATCACATGGCATCTATATCAGAGTCACACTGAAATTGATCCAGGAGAGTTGACTGACTTGCGTTCTGCTTCTGTCAATAATGAAAATTTTGCTCAAGCTGCTGTTAGACGAAACCTTCACCAGCACCTTCTTCATAGCTCGGGATTATTACAAAACCAGATATTAGAATATGCGAAAGTTATTTCTGAATCAGAAGACAACGGCGTACCACTCCAAGGCATTAAAGCTCCTAAGGCACTTGGAGATCTAGTAGAGAGCATTGCTGGGGCTATACTAATTGATACCAAGCTCGACCTTGATCAAGTGTGGAAGATTTTCAATCCTCTGCTATCTCCCATTGTTACACCTGATAAACTTGAACTGCCTCCATTGCGTGAATTAAATCAATTATGTGACTCTCTCGGATATTTTGTAAAAGTAAAAATAAGCCGTGATAAGAAGGGAACCATGGAACATGTTGAGCTCAGTGTACAGTTGCCAAATACTCGATTGGTTCGAGAGGGAAAGGGACCAAATAAAAAATCTGCGAAAGGAGACGCTGCTTTTCAGTTGTTGAAGGAACTTGAGAAAAATGGAATTTTATATAGCTTGTCCAAGGGAAAAAGAGTAATGGATTACACTATTCCCACTTGTCAAATTGAGGACCAATCCCCAAAGCCAGTAGCAAATAAAAAGCCCAAATTGGAGAAAACTAACTCGGCTGTAAATGAATCTACTGGTGATCTCAAGAACGCTTCCAGTCAAGCCTCTGATACTAGTGGTTCCATTCCAGTTATTTCATCAATTAAAATGAATCGGAAGGGAGGACCCCGTAGCGAACTGTATGAAGTCTGCAAGAGAAAGCTGTGGCCATTGCCTTCCTTTGATTCAACAGAATATAAAGATAGAACTCTATTTGAATCATGTAAAGGCCTGGAAGGAAGCAAAGGACTTAACTGCTTTGTGTCGAAAATAACTTTGGGCATACCAGGTTACGGAAATATAGAATGCCAAGGAGAAGCTAGAAGTGATAAGAAGAGCTCGTATGACTCTGCTGCAGTCCAAGCGCTTTATGAGCTACAACGGCTTGGAAAAATTATAATTAAGATTGATGATCGTGATATAGAATGCCAAGGAGAAGCCACAAGTGGAATAAAGAGCTCACTTGACTCTGCTGCAGTCCAATAG 5007 0.4016 MDDSIMDSSNDNDDQNQTKNLKRKFDHLYAKPNVDEDSPSQEQTLIANLVPRRDQLEAFEVAKKRNTIAIMDTGSGKTLIAILLIKETGQAIRSSGVKKLIVFLAPTVHLVNQQYKNIKLNTDLQVGEYYGSKGVDTWNLKSWQKEVSENDVMVMTPQILLDAFRKAFLSIEMICLMVIDECHWASGNHPYAKIMAEFYHQANEKPKIFGMTASPVGKRGVSSTLVCEGQISDLENILDSQSYVVKDRTEIDVSIPSAKESCRFYDPAWFHALSLKPKIEASWSKCDVLLSEFQSNYKDMDDKFKALHQRMSNELAKILYCLEDLGLLCAYEAAKICQRKFAKINAECEIYRKANLQCVTVIEEVIQIIEESLHLADEMILDAQFDCSKAVDMGYISPKLLELIKLFESFGEPSQLLCLIFVERIITAKVIERFVKKVSQISHLTVAYVTGSNTSADALARNRQKEILDSFRSGKVNLLFTTDVLEEGIHVPNCSCVIRFDLPTTVCSYIQSRGRSRRANSQFILMLERGNLKQRNQLFDIIRSERSMNDAAVSKDHESNLRAFTVRKTESYCVDSTGASVTLDSSVSLINQYCEKLPRDKYSSAKPNFDLLPMEGGGHVCKLTLPPNAAFQTLVGPSGKDVRHAKTLVCLEACKKLHQMGALNDHLVPFIEDPLEADTIIKNKESNSSAGVGAGTTKRKELHGTASVQALCGSWGDKLDGAKFHAYKFEFKCNIVSEIYSGFVLLVESKLDDDVGNLELDLYLISKMVKTSVISCGQVDLDAEQVTKAKSFHELFFNGLFGRLIRKSTTVQGEREFLLQKDTELLWSPKNWRRFSLVAEVSDDNSKIISPPCDTSSSSDMECESTNMFHFANRVVDVSSVKDNVALAIHTGKVYCIIDVVDNSSAESPFDGNNDKSGEDKMTFTQYFQKRYGITLRHPEQPLLRLKQGHNAHNLFLNVPEEDGGDKSTQVGPVAPKVPVHVHIPPELLCLLDVKRDVYKSMYLLPSLMYRIESLMLSSQLRAEINDHTDNFKIPSSLILEALTTLRCCEKFSMERLELLGDSVLKYAVSCHLFLKFPKKHEGHLSAKRQWAVRNSTLHKLGTDRKLQGYIRDSAFEPRRWIAPGQDCIHTVPCDCGLETLEVPLDVKFHTEDPKVVVGKLCDRGHRWMCSKTIADCVEALIGAYYVGGGLIASLHMMKWLGIDSGLELSMVDEAITTASLHTYTPKVNEIASLEAKIGYEFSVKGLLVEATTHLSETEHGTGCCYERLEFLGDSVLDLLITWHLYQSHTEIDPGELTDLRSASVNNENFAQAAVRRNLHQHLLHSSGLLQNQILEYAKVISESEDNGVPLQGIKAPKALGDLVESIAGAILIDTKLDLDQVWKIFNPLLSPIVTPDKLELPPLRELNQLCDSLGYFVKVKISRDKKGTMEHVELSVQLPNTRLVREGKGPNKKSAKGDAAFQLLKELEKNGILYSLSKGKRVMDYTIPTCQIEDQSPKPVANKKPKLEKTNSAVNESTGDLKNASSQASDTSGSIPVISSIKMNRKGGPRSELYEVCKRKLWPLPSFDSTEYKDRTLFESCKGLEGSKGLNCFVSKITLGIPGYGNIECQGEARSDKKSSYDSAAVQALYELQRLGKIIIKIDDRDIECQGEATSGIKSSLDSAAVQ* 1669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0998 1668 SUPERFAMILY RNase III domain-like 1230 1396 IPR036389 GO:0004525|GO:0006396
Mal2g0998 1668 MobiDBLite consensus disorder prediction 1512 1540 - -
Mal2g0998 1668 SUPERFAMILY RNase III domain-like 1031 1204 IPR036389 GO:0004525|GO:0006396
Mal2g0998 1668 Gene3D - 391 553 IPR027417 -
Mal2g0998 1668 ProSiteProfiles Ribonuclease III family domain profile. 1018 1190 IPR000999 GO:0004525|GO:0006396
Mal2g0998 1668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 524 IPR027417 -
Mal2g0998 1668 Gene3D Ribonuclease III domain 1227 1398 IPR036389 GO:0004525|GO:0006396
Mal2g0998 1668 ProSiteProfiles Ribonuclease III family domain profile. 1231 1376 IPR000999 GO:0004525|GO:0006396
Mal2g0998 1668 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 36 1639 - -
Mal2g0998 1668 CDD DEXHc_dicer 51 247 - -
Mal2g0998 1668 Pfam Dicer dimerisation domain 586 672 - -
Mal2g0998 1668 SMART PAZ_2_a_3 858 1017 IPR003100 GO:0005515
Mal2g0998 1668 Gene3D paz domain 860 994 - -
Mal2g0998 1668 Pfam Helicase conserved C-terminal domain 415 520 IPR001650 -
Mal2g0998 1668 Pfam Type III restriction enzyme, res subunit 46 215 IPR006935 GO:0003677|GO:0005524|GO:0016787
Mal2g0998 1668 MobiDBLite consensus disorder prediction 1 26 - -
Mal2g0998 1668 SMART helicmild6 432 520 IPR001650 -
Mal2g0998 1668 Pfam Ribonuclease III domain 1267 1375 IPR000999 GO:0004525|GO:0006396
Mal2g0998 1668 Pfam Ribonuclease III domain 1055 1189 IPR000999 GO:0004525|GO:0006396
Mal2g0998 1668 Gene3D Ribonuclease III domain 1021 1200 IPR036389 GO:0004525|GO:0006396
Mal2g0998 1668 SUPERFAMILY PAZ domain 878 992 IPR036085 GO:0005515
Mal2g0998 1668 SMART riboneu5 1246 1399 IPR000999 GO:0004525|GO:0006396
Mal2g0998 1668 SMART riboneu5 1037 1210 IPR000999 GO:0004525|GO:0006396
Mal2g0998 1668 Pfam PAZ domain 878 1014 IPR003100 GO:0005515
Mal2g0998 1668 Gene3D - 46 281 IPR027417 -
Mal2g0998 1668 Gene3D Dicer dimerisation domain 581 679 IPR038248 -
Mal2g0998 1668 CDD SF2_C_dicer 395 527 - -
Mal2g0998 1668 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 58 233 IPR014001 -
Mal2g0998 1668 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1402 1470 IPR014720 -
Mal2g0998 1668 ProSiteProfiles PAZ domain profile. 881 962 IPR003100 GO:0005515
Mal2g0998 1668 SMART ultradead3 47 251 IPR014001 -
Mal2g0998 1668 ProSitePatterns Ribonuclease III family signature. 1267 1275 IPR000999 GO:0004525|GO:0006396
Mal2g0998 1668 MobiDBLite consensus disorder prediction 1495 1543 - -
Mal2g0998 1668 PANTHER DICER-RELATED 36 1639 - -
Mal2g0998 1668 Gene3D - 1556 1635 - -
Mal2g0998 1668 CDD RIBOc 1247 1397 IPR000999 GO:0004525|GO:0006396
Mal2g0998 1668 CDD RIBOc 1037 1201 IPR000999 GO:0004525|GO:0006396
Mal2g0998 1668 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 586 677 IPR005034 GO:0016891
Mal2g0998 1668 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 402 562 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0998 Mal-Chr2 11734025 11746361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0998 417 518 Eukaryotic Initiation Factors Gene Family AT1G72730 38.679 1.21e-07 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0998 K11592 - gmx:100806831 2258.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g0998 2 11734025 11746361 Mal2g0998 2 11734025 11746361 ECH
Mal5g5071 5 124376822 124385694 Mal2g0998 2 11734025 11746361 ECH