Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g0996 ATGGCGGATGTCATGATAATGAAAGAAATTGAAGACAAAGCCTCTCTTCTCGGAATCGATCTATCGTCTATCGATCTCGATTCCATTAACCTCCCTCATGGTGAAGACTGTGGAATCCTCAGTGATGATGACGATGTTTTGCAAGAGGAGAATCTCGAGTTTGATTCTGGATTTGGGAACATTATTGTAGTGGATAATCTTCCTGTTGTTCCTAAGGAGAAATTTGAGAAGCTTGTAACTGTTGTTCGTAAGATTTATAGTCAGATTGGTATTATTAAAGATGATGGTCTTTGGATGCCTGTTGATCCCGCCACTGAAAAGTCCTTAGGTTACTGCTTCATTGAGTACAATACTCCTCAGGAAGCTGAGCTTGCTAAAGAGAGGACTCAAGGATACAAATTGGATCGTTCCCATATATTTGCTGTGAGTATGTTCGATGATTTTGATCGGTTTATGAAGGTTCCGGACGAGTGGGCTCCTCCTCCAAACAAGGAATATGCTCCAGGGGAAAATCTCCAACAATGGCTTACTGATGCTAAGGCCCGAGACCAGTTTGTGATTCGTGCTGGTTCAGATACCGAGGTTTTGTGGAATGATGCTAAGCTTTTAAAGCCTGACCCTGTTTATAAACGTGGATTTTGGACGGAGAGTTTTGTACAATGGTCGCCTTTGGGCACATACTTGGCTACAGTTCACCGTCAGGGGGCAGCAGTCTGGGGAGGTGCTACAACCTTTAATCGTCTCATGCGTTATGCGCATCCTCAGGTTAAGCTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTAACTTATAGCAGCCACGAACCAAGCAATCCTCGAGATGCTAATAGGGTGGTGATAAATATATTTGATGTGAGGACTGGTAAAGTGATGAGAGATTTTAAGGGAAGTGCTGATGATTTTGCTATTGGAGGTACCGGGGGTGTTACAGGAGTGTCATGGCCTGTTTTCAAATGGAGTGGTGGAAGAGATGACAAGTATTTTGCAAGGATGGGAAAAAATGTACTTTCTGTATATGAGACAGAAACATTTTCTCTTGTTGACAAAAAATCTTTGAAGGTTGAAAATATAATGGATTTCAGCTGGTCACCAACTGATCCAATCATTTCACTCTTTGTTCCCGAGACAGGAGGTGGTAACCAACCTGCTAGGGTAAGTCTTGTTCAAATCCCCAGCAAGGAAGAACTTAGGCAAAAGAACCTTTTTAGTGTCAGTGACTGCAAGATGTACTGGCAGAGCAATGGAGAATACCTTGCTGTTAATGTAGATCGATATACCAAAACAAAGAAAAGCACTTTCACAGGCTTTGAGCTATTCCGTATAAAGGAACGTGACATACCCATTGAAGTTCTGGAGCTTGAAAATAAGAATGATAAGATCATTGCATTTGCTTGGGAGCCAAAGGGACATAGGTTTGCTGTTATTCATGGTGATAGCCCTAAGCCTGATATTAGTATCTACTCTATGCGGACTGCTCAGAACACTGGCCGAGTTTCAAAGCTCACTACTCTGAAAGGCAAGCAGGCAAATGCTTTGTTTTGGTCACCTGCAGGTCGCTTCATTGTACTAGCAGGGTTGAAAGGTTTCAATGGACTGTTAGAATTTTACAATGTTGATGAGCTTGAAACCATGGCTAATACTGAACATTTTTATGCAACTGATGTTGAATGGGATCCAACCGGAAGGTATGTTGCAACTGCTGTGACTTCAGTTCACGAAATGGAAAATGGATTCAATATATGGTCTTTCAATGGAAAACATCTTTATCGGATATTGAAGGATCACTTCTTTCAGTTCTTATGGAGACCGCGACCAGCATCTTTCTTGACTGCTGAGAAGGAGGAAGAGATTGCAAAGAACTTGAAGAAGTATAGTAAGAAATATGAAGCTGAAGATCAAGATGTTTCGTTGCTGCTGAGTGAGCAGGAGCGTGAGAAGCGTAGGATCTTGAAAGAAGATTGGGACAAGTGGGCCAATGAATGGAAGCTGTTGCATGAAGAAGAGAAGTTTGAGAGAGAAAATCTGAGGGACGGAGAAGCTAGTGACGAGGAAGAGGAATATGAGGCAAAGGACATTGAAGTCGAGGAAGTAGTCAATGTTTCCAAAGAGATCCTTCAATTTGAGTATGGTCAAGAGTGA 2160 0.4199 MADVMIMKEIEDKASLLGIDLSSIDLDSINLPHGEDCGILSDDDDVLQEENLEFDSGFGNIIVVDNLPVVPKEKFEKLVTVVRKIYSQIGIIKDDGLWMPVDPATEKSLGYCFIEYNTPQEAELAKERTQGYKLDRSHIFAVSMFDDFDRFMKVPDEWAPPPNKEYAPGENLQQWLTDAKARDQFVIRAGSDTEVLWNDAKLLKPDPVYKRGFWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGTGGVTGVSWPVFKWSGGRDDKYFARMGKNVLSVYETETFSLVDKKSLKVENIMDFSWSPTDPIISLFVPETGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGEYLAVNVDRYTKTKKSTFTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDSPKPDISIYSMRTAQNTGRVSKLTTLKGKQANALFWSPAGRFIVLAGLKGFNGLLEFYNVDELETMANTEHFYATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPASFLTAEKEEEIAKNLKKYSKKYEAEDQDVSLLLSEQEREKRRILKEDWDKWANEWKLLHEEEKFERENLRDGEASDEEEEYEAKDIEVEEVVNVSKEILQFEYGQE* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g0996 719 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 713 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mal2g0996 719 SMART rrm1_1 61 143 IPR000504 GO:0003723
Mal2g0996 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 5 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mal2g0996 719 PANTHER BNACNNG51870D PROTEIN 5 712 - -
Mal2g0996 719 Gene3D - 59 143 IPR012677 -
Mal2g0996 719 PIRSF Transl_init_eIF3b 7 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Mal2g0996 719 Coils Coil 618 638 - -
Mal2g0996 719 Gene3D - 189 381 IPR015943 GO:0005515
Mal2g0996 719 Gene3D - 410 625 IPR015943 GO:0005515
Mal2g0996 719 SUPERFAMILY DPP6 N-terminal domain-like 217 599 - -
Mal2g0996 719 CDD RRM_eIF3B 59 142 IPR034363 -
Mal2g0996 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Mal2g0996 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 137 IPR000504 GO:0003723
Mal2g0996 719 Pfam Eukaryotic translation initiation factor eIF2A 406 606 IPR013979 -
Mal2g0996 719 SUPERFAMILY RNA-binding domain, RBD 58 140 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g0996 Mal-Chr2 11716262 11719974 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g0996 5 713 Eukaryotic Initiation Factors Gene Family AT5G27640 75.915 0.0 1155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g0996 K03253 - gmx:100779711 1319.29